Strain Fitness in Shewanella oneidensis MR-1 around SO4757

Experiment: methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.008 vol%
4,966,140	+				-2.3
4,966,142	-				-1.2
4,966,157	+				-1.7
4,966,164	-				-0.8
4,966,220	-				+0.4
4,966,220	-				-0.3
4,966,422	+		SO4756	0.28	+0.2
4,966,468	+		SO4756	0.33	-0.5
4,966,476	-		SO4756	0.34	-1.1
4,966,511	-		SO4756	0.39	-2.1
4,966,557	-		SO4756	0.45	-0.7
4,966,557	-		SO4756	0.45	+0.2
4,966,584	+		SO4756	0.48	+0.3
4,966,736	-		SO4756	0.67	-1.6
4,966,845	+		SO4756	0.81	-1.2
4,966,995	+				+0.5
4,966,995	+				+0.7
4,967,057	+				-2.0
4,967,065	-				-0.1
4,967,066	+				-0.3
4,967,261	+	gidB	SO4757	0.31	-2.1
4,967,273	+	gidB	SO4757	0.33	-1.1
4,967,273	+	gidB	SO4757	0.33	-1.6
4,967,273	+	gidB	SO4757	0.33	-1.1
4,967,273	+	gidB	SO4757	0.33	-1.5
4,967,273	+	gidB	SO4757	0.33	-1.2
4,967,281	-	gidB	SO4757	0.34	-1.3
4,967,299	-	gidB	SO4757	0.37	-0.8
4,967,326	+	gidB	SO4757	0.41	-2.5
4,967,334	-	gidB	SO4757	0.43	-0.6
4,967,407	+	gidB	SO4757	0.54	-2.3
4,967,509	+	gidB	SO4757	0.71	-1.5
4,967,509	+	gidB	SO4757	0.71	-1.3
4,967,509	+	gidB	SO4757	0.71	-1.4
4,967,509	+	gidB	SO4757	0.71	-1.5
4,967,509	+	gidB	SO4757	0.71	-1.4
4,967,509	+	gidB	SO4757	0.71	-1.6
4,967,517	-	gidB	SO4757	0.72	-0.5
4,967,517	-	gidB	SO4757	0.72	-0.4
4,967,517	-	gidB	SO4757	0.72	-1.7
4,967,517	-	gidB	SO4757	0.72	+0.6
4,967,517	-	gidB	SO4757	0.72	-0.6
4,967,517	-	gidB	SO4757	0.72	-1.7
4,967,570	-	gidB	SO4757	0.81	+0.2
4,967,578	-	gidB	SO4757	0.82	-0.2
4,967,655	-				-0.5
4,967,700	+				-1.8
4,967,705	-				-0.3
4,967,729	+				-0.5
4,967,739	+				-0.6
4,967,747	-				-0.9
4,967,747	-				-0.3
4,967,907	+				-0.9
4,967,997	-	gidA	SO4758	0.10	-0.7
4,968,122	-	gidA	SO4758	0.17	-3.0
4,968,276	-	gidA	SO4758	0.25	-0.1
4,968,309	-	gidA	SO4758	0.27	-1.9
4,968,322	-	gidA	SO4758	0.27	-1.1
4,968,341	+	gidA	SO4758	0.28	-0.1
4,968,341	+	gidA	SO4758	0.28	-0.4
4,968,476	-	gidA	SO4758	0.35	+0.2
4,968,592	-	gidA	SO4758	0.42	-2.9