Strain Fitness in Shewanella oneidensis MR-1 around SO4384

Experiment: methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.008 vol%
4,578,353	-	fabF-2	SO4383	0.26	-0.1
4,578,395	-	fabF-2	SO4383	0.29	+0.6
4,578,418	+	fabF-2	SO4383	0.31	+0.3
4,578,454	-	fabF-2	SO4383	0.34	+1.2
4,578,463	-	fabF-2	SO4383	0.35	+0.5
4,578,481	-	fabF-2	SO4383	0.36	+0.5
4,578,510	+	fabF-2	SO4383	0.38	-0.2
4,578,523	+	fabF-2	SO4383	0.39	-0.1
4,578,577	-	fabF-2	SO4383	0.44	+0.9
4,578,614	-	fabF-2	SO4383	0.47	-0.5
4,578,634	+	fabF-2	SO4383	0.48	-0.8
4,578,635	-	fabF-2	SO4383	0.48	-0.8
4,578,655	+	fabF-2	SO4383	0.50	+0.1
4,578,733	-	fabF-2	SO4383	0.56	-0.8
4,578,745	-	fabF-2	SO4383	0.57	+0.2
4,578,745	-	fabF-2	SO4383	0.57	-3.3
4,578,812	-	fabF-2	SO4383	0.62	-0.5
4,578,871	-	fabF-2	SO4383	0.67	-0.3
4,578,871	-	fabF-2	SO4383	0.67	-0.0
4,578,906	+	fabF-2	SO4383	0.70	-0.2
4,579,047	-	fabF-2	SO4383	0.81	-0.5
4,579,055	+	fabF-2	SO4383	0.81	+0.4
4,579,055	+	fabF-2	SO4383	0.81	+0.1
4,579,055	+	fabF-2	SO4383	0.81	-1.8
4,579,055	+	fabF-2	SO4383	0.81	+0.0
4,579,055	+	fabF-2	SO4383	0.81	-1.3
4,579,062	+	fabF-2	SO4383	0.82	+0.1
4,579,063	-	fabF-2	SO4383	0.82	-0.1
4,579,070	-	fabF-2	SO4383	0.83	+0.3
4,579,088	+	fabF-2	SO4383	0.84	+0.0
4,579,194	+				-0.7
4,579,206	+				+1.2
4,579,220	-				-1.6
4,579,224	+				+0.5
4,579,255	-				+0.5
4,579,312	-				-0.2
4,579,337	-				+0.1
4,579,337	-				+0.7
4,579,343	+				+0.5
4,579,346	-				+0.4
4,579,351	-				+0.1
4,579,364	+				+1.7
4,579,372	-				+0.9
4,579,374	+		SO4384	0.10	-1.3
4,579,479	+		SO4384	0.24	+0.1
4,579,487	-		SO4384	0.25	+0.2
4,579,560	+		SO4384	0.35	+0.9
4,579,560	+		SO4384	0.35	-0.3
4,579,568	-		SO4384	0.36	+0.1
4,579,568	-		SO4384	0.36	-0.3
4,579,581	+		SO4384	0.38	-1.1
4,579,581	+		SO4384	0.38	-1.9
4,579,703	-		SO4384	0.54	-0.1
4,579,852	+		SO4384	0.74	+0.0
4,579,860	-		SO4384	0.75	+0.1
4,579,874	+		SO4384	0.77	-1.3
4,579,882	-		SO4384	0.78	-0.4
4,579,885	-		SO4384	0.79	+0.8
4,579,893	-		SO4384	0.80	-0.1
4,579,909	+		SO4384	0.82	-1.0
4,579,919	+		SO4384	0.83	-0.6
4,579,919	+		SO4384	0.83	-0.2
4,579,927	-		SO4384	0.84	-0.3
4,579,927	-		SO4384	0.84	+0.2
4,579,927	-		SO4384	0.84	-0.0
4,579,927	-		SO4384	0.84	-1.9
4,579,942	+		SO4384	0.86	-0.7
4,579,962	-		SO4384	0.89	+0.0
4,579,973	-				-1.0
4,579,990	-				-0.1
4,579,990	-				+0.3
4,580,013	+				-1.2
4,580,013	+				+0.4
4,580,021	-				-0.6
4,580,021	-				-0.7
4,580,036	+				-0.1
4,580,065	-				-0.1
4,580,076	+				+0.6
4,580,107	+				-0.5
4,580,130	-				+0.6
4,580,132	+				-0.0
4,580,132	-				-1.7
4,580,157	-				-0.4
4,580,204	+				-0.3
4,580,213	-				-0.4
4,580,213	-				+0.8
4,580,226	+				+0.3
4,580,234	-				-0.1
4,580,234	-				+0.6
4,580,306	+				+0.4
4,580,313	+				+0.0
4,580,313	+				-1.6
4,580,313	+				+0.6
4,580,321	-				+0.9
4,580,326	+				+0.4
4,580,326	+				-0.2
4,580,326	-				+0.2
4,580,334	-				+0.1
4,580,345	+				-0.7
4,580,362	-				+0.4
4,580,362	-				+0.1
4,580,364	+				-1.2
4,580,364	+				-0.9
4,580,364	+				+0.2
4,580,364	+				+0.2
4,580,364	+				+0.0
4,580,364	+				-0.0
4,580,364	+				+0.1
4,580,369	+				-0.8
4,580,370	+				+0.3
4,580,370	+				-0.2
4,580,372	-				-0.1
4,580,372	-				+0.3
4,580,372	-				+0.7
4,580,372	-				-0.4
4,580,372	-				+1.0
4,580,372	-				-0.1
4,580,376	+				-0.8
4,580,376	+				+0.2
4,580,376	+				-1.0
4,580,376	+				-0.3
4,580,376	+				-0.4
4,580,376	+				+0.0
4,580,376	+				-0.7
4,580,383	+				-1.4
4,580,383	+				-0.0
4,580,383	+				-1.0
4,580,383	+				+0.9
4,580,383	+				+1.7
4,580,383	+				-0.0
4,580,383	+				-0.6
4,580,383	+				+1.1
4,580,383	+				+0.3
4,580,383	+				-0.2
4,580,383	+				+0.8
4,580,383	+				+0.5
4,580,383	+				-0.1
4,580,383	+				-0.1
4,580,383	+				-0.8
4,580,383	+				+0.1
4,580,383	+				-0.3
4,580,383	+				-0.7
4,580,383	+				-0.3
4,580,383	-				-0.1
4,580,384	-				-0.3
4,580,384	-				+1.4
4,580,384	-				-0.5
4,580,384	-				+0.5
4,580,391	-				-1.6
4,580,391	-				-0.3
4,580,391	-				-0.7
4,580,391	-				-0.6
4,580,391	-				+0.3
4,580,391	-				-1.2
4,580,391	-				-2.1
4,580,391	-				-0.6
4,580,391	-				-2.3
4,580,391	-				-1.2
4,580,391	-				-2.9
4,580,391	-				-1.8
4,580,391	-				-0.2
4,580,391	-				-0.3
4,580,391	-				-0.3
4,580,391	-				+1.4
4,580,391	-				-0.1
4,580,391	-				-0.3
4,580,391	-				-1.4
4,580,403	-				-0.4
4,580,404	-				-0.2
4,580,404	-				-0.8
4,580,499	+		SO4385	0.13	-0.2
4,580,507	-		SO4385	0.14	-1.0
4,580,535	+		SO4385	0.16	-0.9
4,580,535	+		SO4385	0.16	-0.4
4,580,535	+		SO4385	0.16	+0.1
4,580,535	+		SO4385	0.16	-0.6
4,580,535	+		SO4385	0.16	-0.0
4,580,539	+		SO4385	0.16	+0.4
4,580,543	-		SO4385	0.16	-0.8
4,580,543	-		SO4385	0.16	-1.3
4,580,543	-		SO4385	0.16	-1.1
4,580,545	+		SO4385	0.17	-0.3
4,580,546	+		SO4385	0.17	-0.4
4,580,554	-		SO4385	0.17	+0.5
4,580,554	-		SO4385	0.17	+1.1
4,580,554	-		SO4385	0.17	+0.0
4,580,554	-		SO4385	0.17	+0.3
4,580,557	+		SO4385	0.17	+0.1
4,580,561	+		SO4385	0.18	+1.7
4,580,561	+		SO4385	0.18	+0.5
4,580,561	+		SO4385	0.18	-0.2
4,580,561	+		SO4385	0.18	-0.2
4,580,561	+		SO4385	0.18	-0.0
4,580,561	+		SO4385	0.18	+0.2
4,580,561	+		SO4385	0.18	+0.1
4,580,561	+		SO4385	0.18	+0.4
4,580,561	+		SO4385	0.18	+0.4
4,580,561	+		SO4385	0.18	+1.1
4,580,561	+		SO4385	0.18	+0.6
4,580,561	+		SO4385	0.18	+1.0
4,580,561	+		SO4385	0.18	+1.4
4,580,561	+		SO4385	0.18	+0.2
4,580,561	+		SO4385	0.18	-0.3
4,580,562	+		SO4385	0.18	+0.2
4,580,565	-		SO4385	0.18	+0.5
4,580,565	-		SO4385	0.18	+0.3
4,580,565	-		SO4385	0.18	+0.1
4,580,567	-		SO4385	0.18	+1.6
4,580,569	-		SO4385	0.18	+1.0
4,580,569	-		SO4385	0.18	+0.1
4,580,569	-		SO4385	0.18	+0.4
4,580,569	-		SO4385	0.18	-2.3
4,580,569	-		SO4385	0.18	-1.1
4,580,569	-		SO4385	0.18	-0.0
4,580,569	-		SO4385	0.18	+0.1
4,580,569	-		SO4385	0.18	+0.9
4,580,569	-		SO4385	0.18	-0.4
4,580,569	-		SO4385	0.18	+0.7
4,580,569	-		SO4385	0.18	+0.1
4,580,569	-		SO4385	0.18	-1.1
4,580,569	-		SO4385	0.18	-0.6
4,580,569	-		SO4385	0.18	-0.1
4,580,603	+		SO4385	0.21	-0.5
4,580,623	+		SO4385	0.22	-1.6
4,580,623	+		SO4385	0.22	+0.1
4,580,631	-		SO4385	0.23	+0.5
4,580,644	-		SO4385	0.24	-0.0
4,580,655	-		SO4385	0.25	+0.7
4,580,662	+		SO4385	0.25	-0.8
4,580,670	-		SO4385	0.26	-0.7
4,580,675	-		SO4385	0.26	-0.4
4,580,724	-		SO4385	0.30	-0.4
4,580,737	+		SO4385	0.31	-0.9
4,580,751	+		SO4385	0.32	+0.3
4,580,754	+		SO4385	0.32	-0.5
4,580,756	+		SO4385	0.32	+0.3
4,580,759	-		SO4385	0.32	+2.3
4,580,759	-		SO4385	0.32	-1.9
4,580,759	-		SO4385	0.32	+0.9
4,580,762	+		SO4385	0.33	+0.2
4,580,762	+		SO4385	0.33	-0.3
4,580,762	+		SO4385	0.33	+1.7
4,580,762	-		SO4385	0.33	+1.9
4,580,762	-		SO4385	0.33	-0.1
4,580,762	-		SO4385	0.33	-0.8
4,580,762	-		SO4385	0.33	+1.0
4,580,764	+		SO4385	0.33	+1.3
4,580,764	+		SO4385	0.33	+0.2
4,580,764	+		SO4385	0.33	+0.0
4,580,764	+		SO4385	0.33	+0.0
4,580,764	+		SO4385	0.33	+2.0
4,580,764	+		SO4385	0.33	-0.9
4,580,764	+		SO4385	0.33	-0.5
4,580,764	+		SO4385	0.33	+0.8
4,580,764	+		SO4385	0.33	-0.0
4,580,764	+		SO4385	0.33	+0.7
4,580,764	+		SO4385	0.33	-0.9
4,580,764	+		SO4385	0.33	-0.8
4,580,764	+		SO4385	0.33	+0.4
4,580,764	+		SO4385	0.33	-1.7
4,580,764	+		SO4385	0.33	-1.8
4,580,764	+		SO4385	0.33	-0.3
4,580,764	+		SO4385	0.33	-0.4
4,580,764	+		SO4385	0.33	+0.7
4,580,764	+		SO4385	0.33	-0.4
4,580,764	+		SO4385	0.33	-0.1
4,580,764	+		SO4385	0.33	+0.4
4,580,764	+		SO4385	0.33	+0.3
4,580,764	+		SO4385	0.33	-0.6
4,580,764	+		SO4385	0.33	-0.0
4,580,764	+		SO4385	0.33	-1.7
4,580,764	+		SO4385	0.33	-0.7
4,580,764	+		SO4385	0.33	-1.3
4,580,764	+		SO4385	0.33	-0.4
4,580,764	+		SO4385	0.33	+1.2
4,580,764	+		SO4385	0.33	-0.7
4,580,764	+		SO4385	0.33	+0.4
4,580,764	+		SO4385	0.33	-0.2
4,580,764	+		SO4385	0.33	-0.5
4,580,764	+		SO4385	0.33	+0.1
4,580,764	+		SO4385	0.33	-1.0
4,580,764	+		SO4385	0.33	+1.2
4,580,764	+		SO4385	0.33	-0.7
4,580,764	+		SO4385	0.33	+0.6
4,580,764	+		SO4385	0.33	+1.4
4,580,764	+		SO4385	0.33	+0.0
4,580,764	+		SO4385	0.33	-0.1
4,580,764	+		SO4385	0.33	-0.1
4,580,764	+		SO4385	0.33	+0.3
4,580,764	+		SO4385	0.33	+0.2
4,580,764	+		SO4385	0.33	+1.1
4,580,764	+		SO4385	0.33	-0.2
4,580,764	+		SO4385	0.33	-0.1
4,580,764	+		SO4385	0.33	+0.4
4,580,764	+		SO4385	0.33	-1.6
4,580,764	+		SO4385	0.33	-0.2
4,580,764	+		SO4385	0.33	-0.1
4,580,764	+		SO4385	0.33	+0.3
4,580,764	+		SO4385	0.33	-0.5
4,580,764	+		SO4385	0.33	+0.9
4,580,764	+		SO4385	0.33	-0.3
4,580,764	+		SO4385	0.33	-0.0
4,580,764	+		SO4385	0.33	-0.2
4,580,764	+		SO4385	0.33	-0.3
4,580,764	+		SO4385	0.33	-1.1
4,580,764	+		SO4385	0.33	-1.6
4,580,764	+		SO4385	0.33	+0.2
4,580,764	+		SO4385	0.33	-0.5
4,580,764	+		SO4385	0.33	-1.5
4,580,764	+		SO4385	0.33	-0.6
4,580,764	+		SO4385	0.33	+0.5
4,580,764	+		SO4385	0.33	-0.4
4,580,764	+		SO4385	0.33	+0.7
4,580,764	+		SO4385	0.33	-0.1
4,580,764	+		SO4385	0.33	+0.2
4,580,764	+		SO4385	0.33	-1.1
4,580,771	+		SO4385	0.33	-0.8
4,580,771	+		SO4385	0.33	+0.2
4,580,771	+		SO4385	0.33	-0.8
4,580,772	-		SO4385	0.33	-0.9
4,580,772	-		SO4385	0.33	-0.7
4,580,772	-		SO4385	0.33	-0.0
4,580,772	-		SO4385	0.33	+0.3
4,580,772	-		SO4385	0.33	+0.2
4,580,772	-		SO4385	0.33	+0.4
4,580,772	-		SO4385	0.33	+0.1
4,580,772	-		SO4385	0.33	-0.0
4,580,772	-		SO4385	0.33	+0.6
4,580,772	-		SO4385	0.33	+0.6
4,580,772	-		SO4385	0.33	-1.4
4,580,772	-		SO4385	0.33	-0.6
4,580,772	-		SO4385	0.33	+2.0
4,580,772	-		SO4385	0.33	-0.3
4,580,772	-		SO4385	0.33	+0.0
4,580,772	-		SO4385	0.33	+0.2
4,580,772	-		SO4385	0.33	+0.6
4,580,772	-		SO4385	0.33	-0.3
4,580,772	-		SO4385	0.33	+0.2
4,580,772	-		SO4385	0.33	+0.6
4,580,772	-		SO4385	0.33	-0.2
4,580,772	-		SO4385	0.33	+0.7
4,580,772	-		SO4385	0.33	+0.1
4,580,772	-		SO4385	0.33	+2.4
4,580,772	-		SO4385	0.33	+0.1
4,580,772	-		SO4385	0.33	-0.0
4,580,772	-		SO4385	0.33	+0.9
4,580,772	-		SO4385	0.33	+0.1
4,580,772	-		SO4385	0.33	-0.5
4,580,772	-		SO4385	0.33	-0.9
4,580,772	-		SO4385	0.33	+0.2
4,580,772	-		SO4385	0.33	-0.9
4,580,772	-		SO4385	0.33	+0.3
4,580,772	-		SO4385	0.33	-2.1
4,580,772	-		SO4385	0.33	-0.9
4,580,772	-		SO4385	0.33	+0.9
4,580,772	-		SO4385	0.33	-0.3
4,580,772	-		SO4385	0.33	-2.9
4,580,772	-		SO4385	0.33	-0.7
4,580,772	-		SO4385	0.33	-0.1
4,580,772	-		SO4385	0.33	+0.0
4,580,772	-		SO4385	0.33	+0.1
4,580,772	-		SO4385	0.33	+0.4
4,580,772	-		SO4385	0.33	+1.9
4,580,772	-		SO4385	0.33	+0.2
4,580,772	-		SO4385	0.33	-0.2
4,580,772	-		SO4385	0.33	+0.4
4,580,772	-		SO4385	0.33	+0.2
4,580,772	-		SO4385	0.33	-0.3
4,580,772	-		SO4385	0.33	+0.5
4,580,772	-		SO4385	0.33	-0.3
4,580,772	-		SO4385	0.33	-0.1
4,580,772	-		SO4385	0.33	+0.1
4,580,772	-		SO4385	0.33	-0.2
4,580,772	-		SO4385	0.33	+0.2
4,580,772	-		SO4385	0.33	-0.7
4,580,772	-		SO4385	0.33	-0.4
4,580,772	-		SO4385	0.33	+0.0
4,580,772	-		SO4385	0.33	-0.2
4,580,772	-		SO4385	0.33	+0.6
4,580,772	-		SO4385	0.33	-1.6
4,580,772	-		SO4385	0.33	+0.9
4,580,774	-		SO4385	0.33	-2.3
4,580,774	-		SO4385	0.33	-0.5
4,580,776	+		SO4385	0.34	+0.2
4,580,776	+		SO4385	0.34	-1.3
4,580,776	+		SO4385	0.34	-0.0
4,580,776	+		SO4385	0.34	-0.1
4,580,776	+		SO4385	0.34	+0.1
4,580,776	+		SO4385	0.34	+0.1
4,580,776	+		SO4385	0.34	+0.1
4,580,778	+		SO4385	0.34	-0.0
4,580,779	-		SO4385	0.34	-0.7
4,580,783	+		SO4385	0.34	-0.0
4,580,784	-		SO4385	0.34	+1.0
4,580,784	-		SO4385	0.34	+0.1
4,580,784	-		SO4385	0.34	-0.2
4,580,784	-		SO4385	0.34	+0.4
4,580,785	-		SO4385	0.34	+0.6
4,580,792	-		SO4385	0.35	-0.5
4,580,795	-		SO4385	0.35	-0.3
4,580,795	-		SO4385	0.35	-0.6
4,580,844	+		SO4385	0.39	-0.4
4,580,852	-		SO4385	0.39	+0.1
4,580,854	+		SO4385	0.39	+0.5
4,580,862	-		SO4385	0.40	-0.7
4,580,868	-		SO4385	0.40	-1.2
4,580,874	+		SO4385	0.41	+1.3
4,580,874	+		SO4385	0.41	-0.0
4,580,876	+		SO4385	0.41	+1.4
4,580,882	-		SO4385	0.41	-0.6
4,580,884	-		SO4385	0.42	+0.5
4,580,884	-		SO4385	0.42	+0.0
4,580,884	-		SO4385	0.42	+0.1
4,580,891	+		SO4385	0.42	+0.0
4,580,891	+		SO4385	0.42	-0.6
4,580,899	-		SO4385	0.43	-0.7
4,580,900	-		SO4385	0.43	+0.8
4,580,902	+		SO4385	0.43	-0.4
4,580,910	-		SO4385	0.43	-0.3
4,580,912	+		SO4385	0.44	+0.4
4,580,919	+		SO4385	0.44	+0.0
4,580,920	-		SO4385	0.44	+0.6
4,580,941	+		SO4385	0.46	-0.3
4,580,963	+		SO4385	0.47	-0.4
4,580,983	-		SO4385	0.49	+0.4
4,581,004	+		SO4385	0.50	-1.2