Strain Fitness in Shewanella oneidensis MR-1 around SO4169

Experiment: methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.008 vol%
4,340,924	+				+0.4
4,340,932	-				-0.4
4,340,932	-				-1.6
4,340,932	-				-1.0
4,341,081	-		SO4168	0.21	-1.2
4,341,081	-		SO4168	0.21	-0.1
4,341,081	-		SO4168	0.21	-0.1
4,341,081	-		SO4168	0.21	+0.3
4,341,081	-		SO4168	0.21	-0.6
4,341,081	-		SO4168	0.21	+0.1
4,341,081	-		SO4168	0.21	+0.1
4,341,374	+				+1.1
4,341,492	+				-0.9
4,341,508	+				+0.6
4,341,575	+				+0.4
4,341,717	+				+0.8
4,341,734	-				-0.0
4,341,737	-				+0.6
4,341,871	+				-1.2
4,341,871	+				+0.0
4,341,871	+				-1.2
4,341,879	-				-0.6
4,341,879	-				-0.7
4,341,879	-				-0.3
4,341,879	-				-1.3
4,341,879	-				+0.0
4,341,879	-				-2.3
4,341,879	-				-0.2
4,341,996	-		SO4169	0.12	-0.8
4,341,996	-		SO4169	0.12	+0.4
4,341,996	-		SO4169	0.12	-1.0
4,342,064	+		SO4169	0.16	-0.3
4,342,064	+		SO4169	0.16	+0.0
4,342,064	+		SO4169	0.16	+0.1
4,342,064	+		SO4169	0.16	-1.3
4,342,064	+		SO4169	0.16	-0.1
4,342,072	-		SO4169	0.17	-0.3
4,342,072	-		SO4169	0.17	+0.0
4,342,096	-		SO4169	0.18	-1.2
4,342,102	-		SO4169	0.19	+0.3
4,342,276	-		SO4169	0.30	-0.8
4,342,276	-		SO4169	0.30	+0.0
4,342,336	+		SO4169	0.33	-0.3
4,342,357	+		SO4169	0.35	+0.3
4,342,427	+		SO4169	0.39	-1.8
4,342,505	+		SO4169	0.44	-0.6
4,342,519	+		SO4169	0.45	-0.1
4,342,609	+		SO4169	0.51	-0.2
4,342,711	+		SO4169	0.57	+0.8
4,342,835	-		SO4169	0.65	+2.4
4,342,837	+		SO4169	0.65	+0.1
4,342,845	-		SO4169	0.66	-0.6
4,342,909	-		SO4169	0.70	-0.4
4,342,954	-		SO4169	0.73	+0.5
4,343,073	+		SO4169	0.81	-1.2
4,343,218	-		SO4169	0.90	-0.4
4,343,218	-		SO4169	0.90	-0.7
4,343,240	+				+0.8
4,343,240	+				+0.4
4,343,262	+				-0.2
4,343,270	-				-0.1
4,343,277	+				-0.7
4,343,277	+				+0.5
4,343,299	+				+0.4
4,343,307	-				-0.0
4,343,385	+				-0.1
4,343,385	+				-0.9
4,343,418	-				+0.0
4,343,418	-				-0.6
4,343,440	-				-1.5
4,343,441	-				+0.4
4,343,447	-				-1.3
4,343,507	+		SO4170	0.15	-0.6
4,343,564	-		SO4170	0.23	-0.1
4,343,571	-		SO4170	0.24	-0.6
4,343,745	+		SO4170	0.48	-0.1
4,343,758	+		SO4170	0.50	-0.5
4,343,758	+		SO4170	0.50	+0.1
4,343,766	-		SO4170	0.51	+0.3
4,343,839	+		SO4170	0.61	+1.4
4,343,853	-		SO4170	0.63	+1.2
4,343,921	-		SO4170	0.73	+0.5
4,344,027	-		SO4170	0.88	+0.1
4,344,037	-		SO4170	0.89	-1.2
4,344,094	+				-0.9
4,344,094	+				-0.4
4,344,107	-				+0.9
4,344,156	+				-0.6
4,344,156	+				+0.6
4,344,164	-				-0.7
4,344,164	-				+0.0
4,344,210	-		SO4171	0.11	+0.4
4,344,264	+		SO4171	0.22	-0.3