Strain Fitness in Shewanella oneidensis MR-1 around SO4057

Experiment: methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.008 vol%
4,211,630	-	metB	SO4056	0.33	+0.3
4,211,637	-	metB	SO4056	0.34	+1.0
4,211,637	-	metB	SO4056	0.34	-1.2
4,211,723	-	metB	SO4056	0.41	+0.5
4,211,852	-	metB	SO4056	0.52	-0.2
4,211,881	+	metB	SO4056	0.54	+0.6
4,211,884	-	metB	SO4056	0.54	+0.6
4,211,912	-	metB	SO4056	0.57	-0.6
4,211,959	+	metB	SO4056	0.61	+0.3
4,211,959	+	metB	SO4056	0.61	+0.6
4,211,960	+	metB	SO4056	0.61	-0.3
4,211,960	+	metB	SO4056	0.61	+0.2
4,211,967	-	metB	SO4056	0.61	+0.2
4,211,967	-	metB	SO4056	0.61	-0.3
4,211,967	-	metB	SO4056	0.61	+0.7
4,211,968	-	metB	SO4056	0.62	-0.9
4,211,986	+	metB	SO4056	0.63	-1.2
4,211,986	+	metB	SO4056	0.63	+0.3
4,211,994	-	metB	SO4056	0.64	-0.8
4,212,186	-	metB	SO4056	0.80	+0.9
4,212,274	-	metB	SO4056	0.87	-0.8
4,212,575	+				+0.6
4,212,622	+				-0.5
4,212,663	-	metJ	SO4057	0.12	-2.2
4,212,704	+	metJ	SO4057	0.25	-0.3
4,212,768	-	metJ	SO4057	0.45	-1.7
4,212,840	-	metJ	SO4057	0.68	-0.2
4,212,840	-	metJ	SO4057	0.68	-1.6
4,213,074	+				+0.1
4,213,127	-		SO4058	0.12	-0.4
4,213,316	-		SO4058	0.38	+0.8
4,213,334	+		SO4058	0.40	-0.6
4,213,423	+		SO4058	0.52	+1.2
4,213,609	+		SO4058	0.77	-0.6
4,213,617	-		SO4058	0.78	-0.9
4,213,710	+				+0.6
4,213,710	+				+0.3
4,213,710	+				-0.4
4,213,718	-				+0.5
4,213,735	-				+0.8