Strain Fitness in Shewanella oneidensis MR-1 around SO3674

Experiment: methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.008 vol%
3,826,040	+				+0.3
3,826,040	+				-0.0
3,826,061	+				+0.1
3,826,296	+	hmuT	SO3673	0.25	+0.2
3,826,348	+	hmuT	SO3673	0.31	+0.8
3,826,363	+	hmuT	SO3673	0.32	+0.5
3,826,363	+	hmuT	SO3673	0.32	+0.2
3,826,363	+	hmuT	SO3673	0.32	+0.7
3,826,363	+	hmuT	SO3673	0.32	-0.0
3,826,363	+	hmuT	SO3673	0.32	+0.5
3,826,363	+	hmuT	SO3673	0.32	+0.2
3,826,363	+	hmuT	SO3673	0.32	+0.5
3,826,363	+	hmuT	SO3673	0.32	+0.3
3,826,363	+	hmuT	SO3673	0.32	-0.8
3,826,363	+	hmuT	SO3673	0.32	+1.3
3,826,363	+	hmuT	SO3673	0.32	+0.3
3,826,363	+	hmuT	SO3673	0.32	-0.3
3,826,363	+	hmuT	SO3673	0.32	+0.2
3,826,363	+	hmuT	SO3673	0.32	-0.3
3,826,363	+	hmuT	SO3673	0.32	-0.1
3,826,363	+	hmuT	SO3673	0.32	-0.8
3,826,363	+	hmuT	SO3673	0.32	+0.4
3,826,363	+	hmuT	SO3673	0.32	+0.6
3,826,363	+	hmuT	SO3673	0.32	-0.4
3,826,363	+	hmuT	SO3673	0.32	+0.2
3,826,363	+	hmuT	SO3673	0.32	-1.7
3,826,363	+	hmuT	SO3673	0.32	+0.2
3,826,366	-	hmuT	SO3673	0.32	+0.5
3,826,371	-	hmuT	SO3673	0.33	-0.3
3,826,371	-	hmuT	SO3673	0.33	-0.0
3,826,371	-	hmuT	SO3673	0.33	-1.5
3,826,371	-	hmuT	SO3673	0.33	-0.7
3,826,371	-	hmuT	SO3673	0.33	-0.3
3,826,371	-	hmuT	SO3673	0.33	-1.3
3,826,371	-	hmuT	SO3673	0.33	-1.4
3,826,371	-	hmuT	SO3673	0.33	+0.6
3,826,371	-	hmuT	SO3673	0.33	-0.3
3,826,371	-	hmuT	SO3673	0.33	-0.7
3,826,371	-	hmuT	SO3673	0.33	-0.3
3,826,371	-	hmuT	SO3673	0.33	+0.1
3,826,371	-	hmuT	SO3673	0.33	-0.3
3,826,371	-	hmuT	SO3673	0.33	-0.6
3,826,371	-	hmuT	SO3673	0.33	+0.1
3,826,371	-	hmuT	SO3673	0.33	-0.8
3,826,371	-	hmuT	SO3673	0.33	-2.1
3,826,371	-	hmuT	SO3673	0.33	+0.5
3,826,371	-	hmuT	SO3673	0.33	+0.1
3,826,371	-	hmuT	SO3673	0.33	-0.8
3,826,371	-	hmuT	SO3673	0.33	+0.6
3,826,371	-	hmuT	SO3673	0.33	-0.2
3,826,371	-				-0.8
3,826,381	+	hmuT	SO3673	0.34	-0.3
3,826,425	-	hmuT	SO3673	0.39	+0.3
3,826,433	+	hmuT	SO3673	0.40	-0.3
3,826,441	-	hmuT	SO3673	0.40	-0.2
3,826,443	+	hmuT	SO3673	0.41	-0.3
3,826,507	-	hmuT	SO3673	0.47	-0.1
3,826,520	+	hmuT	SO3673	0.49	-0.6
3,826,606	-	hmuT	SO3673	0.58	-0.1
3,826,606	-	hmuT	SO3673	0.58	+1.0
3,826,721	+	hmuT	SO3673	0.70	-0.1
3,826,721	+	hmuT	SO3673	0.70	-0.6
3,826,728	+	hmuT	SO3673	0.70	+0.7
3,826,841	-	hmuT	SO3673	0.82	+1.3
3,826,903	+	hmuT	SO3673	0.89	-0.8
3,826,911	-	hmuT	SO3673	0.90	-0.6
3,826,938	-				-2.4
3,826,974	+				+0.7
3,826,977	-				+0.1
3,827,028	+				+1.4
3,827,067	+				-0.4
3,827,080	-				+0.1
3,827,134	-	hmuU	SO3674	0.12	-1.5
3,827,158	-	hmuU	SO3674	0.14	-0.3
3,827,203	+	hmuU	SO3674	0.19	-0.5
3,827,243	+	hmuU	SO3674	0.23	+0.7
3,827,340	+	hmuU	SO3674	0.32	-0.3
3,827,417	-	hmuU	SO3674	0.40	+0.7
3,827,462	-	hmuU	SO3674	0.44	-2.3
3,827,500	+	hmuU	SO3674	0.48	-0.2
3,827,510	+	hmuU	SO3674	0.49	-1.4
3,827,510	+	hmuU	SO3674	0.49	-0.1
3,827,524	+	hmuU	SO3674	0.50	-0.3
3,827,556	+	hmuU	SO3674	0.53	-0.6
3,827,556	+	hmuU	SO3674	0.53	+1.5
3,827,625	+	hmuU	SO3674	0.60	-1.3
3,827,713	+	hmuU	SO3674	0.69	-0.5
3,827,744	+	hmuU	SO3674	0.72	-0.5
3,827,744	+	hmuU	SO3674	0.72	-0.7
3,827,744	+	hmuU	SO3674	0.72	+0.2
3,827,752	-	hmuU	SO3674	0.73	-1.1
3,827,752	-	hmuU	SO3674	0.73	-0.3
3,827,815	-	hmuU	SO3674	0.79	-0.1
3,827,976	-				-1.0
3,828,025	-				+0.5
3,828,036	+				+0.7
3,828,043	+				+1.1
3,828,043	+				+0.1
3,828,043	+				-0.0
3,828,114	+				+0.3
3,828,147	-	hmuV	SO_3675	0.13	-0.3
3,828,147	-	hmuV	SO_3675	0.13	+1.3
3,828,147	-	hmuV	SO_3675	0.13	-0.3
3,828,149	+	hmuV	SO_3675	0.13	-0.5
3,828,208	+	hmuV	SO_3675	0.21	-1.2
3,828,215	-	hmuV	SO_3675	0.21	+0.2
3,828,222	+	hmuV	SO_3675	0.22	+0.2
3,828,222	+	hmuV	SO_3675	0.22	-0.6
3,828,222	+	hmuV	SO_3675	0.22	-0.0
3,828,228	-	hmuV	SO_3675	0.23	+0.2
3,828,228	-	hmuV	SO_3675	0.23	+0.5
3,828,230	-	hmuV	SO_3675	0.23	-1.1
3,828,230	-	hmuV	SO_3675	0.23	-0.2
3,828,241	+	hmuV	SO_3675	0.25	+0.3
3,828,261	-	hmuV	SO_3675	0.27	-0.5
3,828,261	-	hmuV	SO_3675	0.27	+0.4
3,828,261	-	hmuV	SO_3675	0.27	-0.5
3,828,263	+	hmuV	SO_3675	0.27	+0.3
3,828,271	-	hmuV	SO_3675	0.28	+1.0
3,828,345	-	hmuV	SO_3675	0.37	-0.1
3,828,347	+	hmuV	SO_3675	0.37	-0.1
3,828,360	-	hmuV	SO_3675	0.39	-1.8
3,828,367	-	hmuV	SO_3675	0.40	-1.1
3,828,489	-	hmuV	SO_3675	0.55	-0.7
3,828,517	-	hmuV	SO_3675	0.58	+0.2
3,828,600	+	hmuV	SO_3675	0.68	+0.9
3,828,622	+	hmuV	SO_3675	0.71	+0.5
3,828,622	+	hmuV	SO_3675	0.71	-0.5
3,828,630	-	hmuV	SO_3675	0.72	-1.7
3,828,630	-	hmuV	SO_3675	0.72	-0.3
3,828,725	+	hmuV	SO_3675	0.84	-1.4
3,828,733	-	hmuV	SO_3675	0.85	+0.2
3,828,733	-	hmuV	SO_3675	0.85	+1.2
3,828,804	-				+2.6
3,828,837	-				-0.3
3,828,890	+				+0.2
3,828,898	-				-0.8
3,828,903	-				-0.6
3,828,903	-				-1.4
3,828,937	-				+0.3