Strain Fitness in Shewanella oneidensis MR-1 around SO3462
Experiment: methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.008 vol% |
---|---|---|---|---|---|
remove | |||||
3,607,026 | + | SO3461 | 0.14 | +0.3 | |
3,607,240 | - | SO3461 | 0.37 | -0.8 | |
3,607,409 | + | SO3461 | 0.54 | +0.8 | |
3,607,498 | - | SO3461 | 0.63 | -2.1 | |
3,607,498 | - | SO3461 | 0.63 | -0.2 | |
3,607,539 | - | SO3461 | 0.68 | -0.3 | |
3,607,688 | + | SO3461 | 0.83 | -0.4 | |
3,607,696 | - | SO3461 | 0.84 | +0.2 | |
3,607,696 | - | SO3461 | 0.84 | +2.2 | |
3,607,748 | - | SO3461 | 0.89 | -0.5 | |
3,607,756 | + | -0.4 | |||
3,607,764 | - | +0.0 | |||
3,608,047 | - | -0.8 | |||
3,608,099 | + | -2.8 | |||
3,608,099 | + | -0.2 | |||
3,608,107 | - | -1.5 | |||
3,608,107 | - | -3.6 | |||
3,608,107 | - | -1.7 | |||
3,608,107 | - | -2.4 | |||
3,608,107 | - | -1.9 | |||
3,608,107 | - | -1.4 | |||
3,608,208 | + | recN | SO3462 | 0.14 | -0.6 |
3,608,307 | + | recN | SO3462 | 0.20 | -0.5 |
3,608,314 | + | recN | SO3462 | 0.20 | -1.7 |
3,608,322 | - | recN | SO3462 | 0.21 | -2.3 |
3,608,383 | + | recN | SO3462 | 0.24 | -1.1 |
3,608,450 | - | recN | SO3462 | 0.28 | -0.8 |
3,608,489 | - | recN | SO3462 | 0.31 | -1.5 |
3,608,646 | + | recN | SO3462 | 0.40 | -1.1 |
3,608,655 | - | recN | SO3462 | 0.41 | -0.8 |
3,608,721 | + | recN | SO3462 | 0.45 | +0.0 |
3,608,750 | + | recN | SO3462 | 0.47 | -2.8 |
3,608,764 | - | recN | SO3462 | 0.47 | -2.2 |
3,608,855 | - | recN | SO3462 | 0.53 | -1.0 |
3,608,856 | - | recN | SO3462 | 0.53 | -1.4 |
3,608,890 | + | recN | SO3462 | 0.55 | -0.7 |
3,608,933 | - | recN | SO3462 | 0.58 | -1.9 |
3,609,078 | - | recN | SO3462 | 0.66 | -0.9 |
3,609,089 | + | recN | SO3462 | 0.67 | -1.4 |
3,609,097 | - | recN | SO3462 | 0.67 | -0.0 |
3,609,396 | - | recN | SO3462 | 0.85 | -0.6 |
3,609,413 | + | recN | SO3462 | 0.86 | -1.9 |
3,609,413 | + | recN | SO3462 | 0.86 | -1.6 |
3,609,413 | + | recN | SO3462 | 0.86 | -2.2 |
3,609,421 | - | recN | SO3462 | 0.87 | -0.6 |
3,609,421 | - | recN | SO3462 | 0.87 | -1.8 |
3,609,998 | - | pgpA | SO3463 | 0.45 | -0.8 |
3,610,027 | - | pgpA | SO3463 | 0.51 | -0.9 |
Or see this region's nucleotide sequence