Strain Fitness in Shewanella oneidensis MR-1 around SO3287

Experiment: methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.008 vol%
3,428,379	-				-1.0
3,428,410	+				-0.1
3,428,410	+				-0.5
3,428,418	-				-0.1
3,428,456	+				+0.4
3,428,456	+				+0.2
3,428,456	+				-0.3
3,428,464	-				-1.0
3,428,475	+				-1.0
3,428,975	+				-1.5
3,428,975	+				-2.2
3,428,983	-				-2.3
3,428,985	+				-2.1
3,428,985	+				-0.5
3,428,985	+				-3.5
3,428,993	-				-2.4
3,429,077	-				-2.7
3,429,082	-				-4.1
3,429,201	+				-2.0
3,429,301	-				-1.1
3,429,518	-	purL	SO3287	0.15	-1.0
3,429,583	-	purL	SO3287	0.17	-1.7
3,429,583	-	purL	SO3287	0.17	-1.8
3,429,626	+	purL	SO3287	0.18	-1.4
3,429,810	+	purL	SO3287	0.22	-0.9
3,429,812	+	purL	SO3287	0.23	-0.8
3,429,837	-	purL	SO3287	0.23	-1.4
3,429,837	-	purL	SO3287	0.23	-2.5
3,430,016	+	purL	SO3287	0.28	-1.2
3,430,034	+	purL	SO3287	0.28	-2.3
3,430,245	+	purL	SO3287	0.34	-1.6
3,430,253	-	purL	SO3287	0.34	-1.8
3,430,264	+	purL	SO3287	0.34	-2.8
3,430,276	+	purL	SO3287	0.34	-2.4
3,430,311	+	purL	SO3287	0.35	-2.4
3,430,311	+	purL	SO3287	0.35	-1.5
3,430,356	-	purL	SO3287	0.37	-0.9
3,430,370	+	purL	SO3287	0.37	-2.2
3,430,378	-	purL	SO3287	0.37	-1.5
3,430,378	-	purL	SO3287	0.37	-2.7
3,430,378	-	purL	SO3287	0.37	-0.2
3,430,378	-	purL	SO3287	0.37	-3.4
3,430,751	-	purL	SO3287	0.47	-2.0
3,430,899	+	purL	SO3287	0.51	-2.2
3,430,899	+	purL	SO3287	0.51	-3.1
3,430,899	+	purL	SO3287	0.51	-2.2
3,430,904	+	purL	SO3287	0.51	-1.8
3,430,907	-	purL	SO3287	0.51	-0.5
3,430,908	+	purL	SO3287	0.51	-3.4
3,430,917	-	purL	SO3287	0.51	-3.5
3,430,997	-	purL	SO3287	0.53	-2.7
3,431,073	-	purL	SO3287	0.55	-0.2
3,431,073	-	purL	SO3287	0.55	-1.5
3,431,073	-	purL	SO3287	0.55	-1.1
3,431,220	-	purL	SO3287	0.59	-1.8
3,431,305	+	purL	SO3287	0.61	-1.7
3,431,375	+	purL	SO3287	0.63	-3.5
3,431,414	+	purL	SO3287	0.64	-0.4
3,431,422	-	purL	SO3287	0.64	-2.4
3,431,422	-	purL	SO3287	0.64	-2.2
3,431,427	+	purL	SO3287	0.64	-2.9
3,431,427	+	purL	SO3287	0.64	-1.6
3,431,435	-	purL	SO3287	0.64	-1.5
3,431,623	-	purL	SO3287	0.69	-1.8
3,431,643	-	purL	SO3287	0.70	-2.2
3,431,653	-	purL	SO3287	0.70	-1.2
3,431,733	+	purL	SO3287	0.72	-2.0
3,431,968	+	purL	SO3287	0.78	-0.7
3,432,028	-	purL	SO3287	0.80	-2.4
3,432,103	+	purL	SO3287	0.82	-1.7
3,432,115	+	purL	SO3287	0.82	-1.1
3,432,189	-	purL	SO3287	0.84	-2.7
3,432,307	-	purL	SO3287	0.87	+1.2
3,432,335	+	purL	SO3287	0.88	-1.8
3,432,335	+	purL	SO3287	0.88	-1.7
3,432,343	-	purL	SO3287	0.88	-1.9
3,432,345	+	purL	SO3287	0.88	-3.1
3,432,367	+	purL	SO3287	0.88	-0.8
3,432,487	-				-0.6
3,432,708	+				-2.2
3,432,721	-				-1.1
3,432,799	-				-2.5
3,432,861	-				-0.2
3,432,861	-				-0.3
3,432,861	-				+0.6
3,432,861	-				+0.3
3,432,861	-				-0.4
3,432,905	-				-1.0
3,432,920	+				-0.0
3,433,005	+				-0.1
3,433,015	+				-0.0
3,433,160	-				-0.3
3,433,241	+				+1.1
3,433,249	-				-0.2
3,433,292	-				+0.4
3,433,344	+		SO3288	0.13	+2.4
3,433,390	+		SO3288	0.17	-0.5
3,433,544	-		SO3288	0.28	-1.7
3,433,591	-		SO3288	0.31	-1.0
3,433,606	+		SO3288	0.32	+0.3
3,433,654	+		SO3288	0.36	-0.5
3,433,677	-		SO3288	0.37	-1.3
3,433,679	-		SO3288	0.38	+0.4
3,433,788	-		SO3288	0.46	-0.6