Strain Fitness in Shewanella oneidensis MR-1 around SO3235

Experiment: methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.008 vol%
3,372,884	-				-0.2
3,372,901	-				+0.6
3,372,917	+				-1.5
3,373,116	+				+1.2
3,373,116	+				-0.4
3,373,116	+				-0.9
3,373,136	+	fliS	SO3233	0.12	-1.6
3,373,145	-	fliS	SO3233	0.14	-1.7
3,373,156	-	fliS	SO3233	0.17	-1.6
3,373,361	+	fliS	SO3233	0.67	-1.0
3,373,370	+	fliS	SO3233	0.69	-0.7
3,373,377	+	fliS	SO3233	0.71	-2.0
3,373,377	+	fliS	SO3233	0.71	-1.0
3,373,385	-	fliS	SO3233	0.73	-0.6
3,373,385	-	fliS	SO3233	0.73	-2.0
3,373,385	-	fliS	SO3233	0.73	-2.2
3,373,389	+	fliS	SO3233	0.74	-0.6
3,373,389	+	fliS	SO3233	0.74	-0.4
3,373,397	-	fliS	SO3233	0.76	-1.0
3,373,400	-	fliS	SO3233	0.76	-0.9
3,373,426	-	fliS	SO3233	0.83	-1.4
3,373,500	+				-0.8
3,373,500	-				+1.3
3,373,539	-		SO3234	0.11	-0.1
3,373,624	+		SO3234	0.38	-0.4
3,373,684	-		SO3234	0.56	-1.0
3,373,711	-		SO3234	0.65	+0.4
3,373,711	-		SO3234	0.65	-1.6
3,373,733	+		SO3234	0.72	-0.8
3,373,749	+		SO3234	0.77	-2.3
3,373,775	+		SO3234	0.85	-1.0
3,373,775	+		SO3234	0.85	-0.2
3,373,783	-		SO3234	0.87	-0.5
3,373,801	-				+0.3
3,374,020	+	fliD	SO3235	0.12	-1.0
3,374,028	-	fliD	SO3235	0.13	-1.7
3,374,036	-	fliD	SO3235	0.13	-1.1
3,374,178	+	fliD	SO3235	0.24	-1.1
3,374,323	+	fliD	SO3235	0.34	-0.6
3,374,331	-	fliD	SO3235	0.35	-1.1
3,374,371	-	fliD	SO3235	0.38	-1.6
3,374,468	+	fliD	SO3235	0.45	-1.0
3,374,642	-	fliD	SO3235	0.58	-1.3
3,374,642	-	fliD	SO3235	0.58	-0.4
3,374,698	+	fliD	SO3235	0.62	+0.0
3,374,740	+	fliD	SO3235	0.65	-1.4
3,374,977	+	fliD	SO3235	0.82	-0.5
3,374,982	+	fliD	SO3235	0.82	-0.3
3,375,121	+				-1.7
3,375,184	+				+0.0
3,375,196	+				-0.6
3,375,262	+				-1.6
3,375,629	-				+0.1
3,375,715	+				-0.7
3,375,966	-		SO3237	0.23	-1.2
3,375,981	-		SO3237	0.24	-2.0
3,375,983	+		SO3237	0.25	-2.4
3,376,122	+		SO3237	0.42	-1.1
3,376,196	+		SO3237	0.51	-0.8