Strain Fitness in Shewanella oneidensis MR-1 around SO3223

Experiment: methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.008 vol%
3,360,157	+	fliM	SO3221	0.71	-0.2
3,360,237	-	fliM	SO3221	0.78	+0.4
3,360,327	+	fliM	SO3221	0.87	-1.0
3,360,415	+				-0.5
3,360,426	+				-1.1
3,360,653	-	fliL	SO3222	0.29	-0.3
3,360,653	-	fliL	SO3222	0.29	-0.5
3,360,772	-	fliL	SO3222	0.52	+0.2
3,360,803	-	fliL	SO3222	0.58	+0.6
3,360,858	-	fliL	SO3222	0.68	-1.2
3,360,947	-	fliL	SO3222	0.85	-0.4
3,361,019	+				-1.6
3,361,024	+				-1.0
3,361,027	-				+0.9
3,361,058	+				-2.4
3,361,235	+				-0.4
3,361,251	+				-0.1
3,361,259	-				-1.2
3,361,259	-				-0.8
3,361,346	+	fliK	SO3223	0.15	-0.9
3,361,623	+	fliK	SO3223	0.33	-1.2
3,361,638	+	fliK	SO3223	0.34	-1.2
3,361,638	+	fliK	SO3223	0.34	-0.8
3,361,638	+	fliK	SO3223	0.34	-3.0
3,361,640	+	fliK	SO3223	0.34	-1.1
3,361,646	-	fliK	SO3223	0.34	-1.2
3,361,646	-	fliK	SO3223	0.34	+0.5
3,361,646	-	fliK	SO3223	0.34	-0.8
3,361,646	-	fliK	SO3223	0.34	-1.1
3,361,646	-	fliK	SO3223	0.34	-0.6
3,361,804	-	fliK	SO3223	0.44	+0.0
3,361,806	+	fliK	SO3223	0.44	-0.8
3,361,918	+	fliK	SO3223	0.51	-2.8
3,362,053	+	fliK	SO3223	0.60	-1.0
3,362,086	+	fliK	SO3223	0.62	-0.2
3,362,094	-	fliK	SO3223	0.62	-1.9
3,362,103	+	fliK	SO3223	0.63	-0.8
3,362,244	-	fliK	SO3223	0.72	-2.4
3,362,248	+	fliK	SO3223	0.72	-1.2
3,362,263	-	fliK	SO3223	0.73	-2.2
3,362,496	-	fliK	SO3223	0.88	-0.9
3,362,695	+				-2.3
3,362,980	-	fliJ	SO3224	0.33	-0.2
3,363,084	+	fliJ	SO3224	0.57	-0.5
3,363,092	+	fliJ	SO3224	0.58	-2.1
3,363,100	-	fliJ	SO3224	0.60	-1.1
3,363,100	-	fliJ	SO3224	0.60	-1.0
3,363,338	+				-1.6
3,363,502	+	fliI	SO3225	0.16	-1.1
3,363,502	+	fliI	SO3225	0.16	-1.5
3,363,510	-	fliI	SO3225	0.17	-1.2
3,363,510	-	fliI	SO3225	0.17	-0.5
3,363,510	-	fliI	SO3225	0.17	-1.2
3,363,510	-	fliI	SO3225	0.17	-2.7
3,363,608	+	fliI	SO3225	0.24	-0.7
3,363,613	-	fliI	SO3225	0.24	-2.4