Strain Fitness in Shewanella oneidensis MR-1 around SO2982

Experiment: methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.008 vol%
3,108,788	+		SO2980	0.34	-2.2
3,108,900	+		SO2980	0.53	+0.3
3,108,900	+		SO2980	0.53	+1.0
3,108,922	+		SO2980	0.57	-0.1
3,108,930	-		SO2980	0.59	-0.4
3,109,021	-		SO2980	0.75	+0.9
3,109,042	-		SO2980	0.78	-0.1
3,109,070	+		SO2980	0.83	+0.2
3,109,145	-				+0.4
3,109,145	-				+0.2
3,109,224	+		SO2981	0.10	+0.8
3,109,229	+		SO2981	0.11	+0.7
3,109,232	-		SO2981	0.11	+1.1
3,109,436	+		SO2981	0.46	+0.3
3,109,669	+		SO2981	0.86	+0.6
3,109,702	-				-0.9
3,109,750	+				-0.1
3,109,808	+		SO2982	0.13	+0.5
3,109,808	+		SO2982	0.13	+0.2
3,109,843	+		SO2982	0.20	+1.4
3,109,910	-		SO2982	0.33	+0.4
3,109,910	-		SO2982	0.33	+0.1
3,109,949	-		SO2982	0.41	+0.6
3,109,950	-		SO2982	0.41	+1.3
3,109,961	+		SO2982	0.43	+1.1
3,110,003	+		SO2982	0.51	+0.1
3,110,045	-		SO2982	0.59	+0.2
3,110,098	+		SO2982	0.69	+0.3
3,110,103	+		SO2982	0.70	+0.5
3,110,113	+		SO2982	0.72	+0.2
3,110,113	+		SO2982	0.72	+0.5
3,110,113	+		SO2982	0.72	+1.2
3,110,113	+		SO2982	0.72	+0.5
3,110,116	-		SO2982	0.73	+1.3
3,110,121	-		SO2982	0.74	+0.7
3,110,121	-		SO2982	0.74	+0.8
3,110,121	-		SO2982	0.74	+1.5
3,110,121	-		SO2982	0.74	+0.3
3,110,121	-		SO2982	0.74	+1.1
3,110,141	+		SO2982	0.78	+2.1
3,110,168	-		SO2982	0.83	+1.3
3,110,173	+		SO2982	0.84	+0.8
3,110,173	+		SO2982	0.84	+0.4
3,110,181	-		SO2982	0.85	+1.1
3,110,216	-				+2.0
3,110,273	-				-1.0
3,110,273	-				-0.5
3,110,332	+		SO2983	0.20	+1.2
3,110,340	-		SO2983	0.22	-0.4
3,110,387	-		SO2983	0.34	+1.0
3,110,468	+		SO2983	0.55	+1.3
3,110,475	+		SO2983	0.57	+1.0
3,110,483	-		SO2983	0.59	+0.8
3,110,574	+		SO2983	0.82	+1.8
3,110,859	-		SO2984	0.41	-0.6
3,110,882	-		SO2984	0.45	+0.1
3,110,961	-		SO2984	0.59	-1.2
3,110,972	-		SO2984	0.61	-0.4
3,110,983	+		SO2984	0.63	-0.7
3,110,983	+		SO2984	0.63	+0.0
3,110,985	-		SO2984	0.64	+1.0
3,111,242	-				+0.8