Strain Fitness in Shewanella oneidensis MR-1 around SO2942

Experiment: methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.008 vol%
3,080,271	+				+0.4
3,080,315	-				-1.4
3,080,357	-				+0.4
3,080,657	+		SO2941	0.29	+0.4
3,080,664	-		SO2941	0.30	+1.3
3,080,665	+		SO2941	0.30	+1.6
3,080,673	-		SO2941	0.32	+0.3
3,080,713	+		SO2941	0.38	+0.2
3,080,713	+		SO2941	0.38	+1.3
3,080,734	+		SO2941	0.41	+0.2
3,080,749	+		SO2941	0.44	-0.6
3,080,750	+		SO2941	0.44	-0.2
3,080,767	-		SO2941	0.47	+0.4
3,080,799	-		SO2941	0.52	-0.2
3,080,891	-		SO2941	0.66	-0.3
3,081,054	+				-0.4
3,081,087	+				-0.2
3,081,098	+				-0.6
3,081,106	-				+0.5
3,081,205	+				+1.3
3,081,223	+				+0.7
3,081,237	+		SO2942	0.10	+0.2
3,081,259	+		SO2942	0.14	+0.1
3,081,271	+		SO2942	0.16	+0.2
3,081,279	-		SO2942	0.18	+0.7
3,081,393	+		SO2942	0.38	+0.5
3,081,667	+		SO2942	0.86	+0.3
3,081,667	+		SO2942	0.86	+1.2
3,081,779	+				+0.7
3,081,793	+				-0.2
3,081,793	+				+0.6
3,081,843	-				+0.7
3,081,859	-		SO2943	0.14	+0.7
3,081,916	+		SO2943	0.36	+0.4
3,081,948	+		SO2943	0.48	+1.3
3,082,040	-		SO2943	0.84	+0.9
3,082,056	+				+0.2
3,082,062	+				+1.2
3,082,129	+				+0.2
3,082,129	+				+2.9
3,082,129	+				+0.4
3,082,129	+				+1.2
3,082,137	-				+1.2
3,082,137	-				-0.1
3,082,137	-				+0.8
3,082,187	-				+0.4
3,082,311	-		SO2944	0.10	-0.6
3,082,353	-		SO2944	0.13	+1.3
3,082,369	-		SO2944	0.14	-0.4
3,082,376	-		SO2944	0.14	+3.1
3,082,447	+		SO2944	0.19	+1.2
3,082,506	-		SO2944	0.22	-1.1
3,082,514	+		SO2944	0.23	+0.7
3,082,565	-		SO2944	0.26	+0.6
3,082,565	-		SO2944	0.26	+0.7
3,082,607	+		SO2944	0.29	+0.0
3,082,613	-		SO2944	0.29	+0.8
3,082,615	-		SO2944	0.29	+0.9
3,082,623	-		SO2944	0.30	+1.0
3,082,687	+		SO2944	0.34	+0.4
3,082,695	-		SO2944	0.34	+0.3
3,082,716	-		SO2944	0.36	+0.2
3,082,716	-		SO2944	0.36	+2.0
3,082,716	-		SO2944	0.36	+0.7
3,082,736	+		SO2944	0.37	+0.3