Experiment: methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2940 and SO2941 are separated by 4 nucleotides SO2941 and SO2942 are separated by 76 nucleotides SO2942 and SO2943 are separated by 77 nucleotides SO2943 and SO2944 are separated by 67 nucleotides
SO2940: SO2940 - prophage LambdaSo, host specificity protein J, putative (NCBI ptt file), at 3,076,443 to 3,080,468
SO2940
SO2941: SO2941 - prophage LambdaSo, tail assembly protein I (NCBI ptt file), at 3,080,473 to 3,081,102
SO2941
SO2942: SO2942 - hypothetical protein (NCBI ptt file), at 3,081,179 to 3,081,745
SO2942
SO2943: SO2943 - conserved domain protein (NCBI ptt file), at 3,081,823 to 3,082,080
SO2943
SO2944: SO2944 - hypothetical protein (NCBI ptt file), at 3,082,148 to 3,083,743
SO2944
Position (kb)
3081
3082 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3080.271 kb on + strand at 3080.315 kb on - strand at 3080.357 kb on - strand at 3080.657 kb on + strand, within SO2941 at 3080.664 kb on - strand, within SO2941 at 3080.665 kb on + strand, within SO2941 at 3080.673 kb on - strand, within SO2941 at 3080.713 kb on + strand, within SO2941 at 3080.713 kb on + strand, within SO2941 at 3080.734 kb on + strand, within SO2941 at 3080.749 kb on + strand, within SO2941 at 3080.750 kb on + strand, within SO2941 at 3080.767 kb on - strand, within SO2941 at 3080.799 kb on - strand, within SO2941 at 3080.891 kb on - strand, within SO2941 at 3081.054 kb on + strand at 3081.087 kb on + strand at 3081.098 kb on + strand at 3081.106 kb on - strand at 3081.205 kb on + strand at 3081.223 kb on + strand at 3081.237 kb on + strand, within SO2942 at 3081.259 kb on + strand, within SO2942 at 3081.271 kb on + strand, within SO2942 at 3081.279 kb on - strand, within SO2942 at 3081.393 kb on + strand, within SO2942 at 3081.667 kb on + strand, within SO2942 at 3081.667 kb on + strand, within SO2942 at 3081.779 kb on + strand at 3081.793 kb on + strand at 3081.793 kb on + strand at 3081.843 kb on - strand at 3081.859 kb on - strand, within SO2943 at 3081.916 kb on + strand, within SO2943 at 3081.948 kb on + strand, within SO2943 at 3082.040 kb on - strand, within SO2943 at 3082.056 kb on + strand at 3082.062 kb on + strand at 3082.129 kb on + strand at 3082.129 kb on + strand at 3082.129 kb on + strand at 3082.129 kb on + strand at 3082.137 kb on - strand at 3082.137 kb on - strand at 3082.137 kb on - strand at 3082.187 kb on - strand at 3082.311 kb on - strand, within SO2944 at 3082.353 kb on - strand, within SO2944 at 3082.369 kb on - strand, within SO2944 at 3082.376 kb on - strand, within SO2944 at 3082.447 kb on + strand, within SO2944 at 3082.506 kb on - strand, within SO2944 at 3082.514 kb on + strand, within SO2944 at 3082.565 kb on - strand, within SO2944 at 3082.565 kb on - strand, within SO2944 at 3082.607 kb on + strand, within SO2944 at 3082.613 kb on - strand, within SO2944 at 3082.615 kb on - strand, within SO2944 at 3082.623 kb on - strand, within SO2944 at 3082.687 kb on + strand, within SO2944 at 3082.695 kb on - strand, within SO2944 at 3082.716 kb on - strand, within SO2944 at 3082.716 kb on - strand, within SO2944 at 3082.716 kb on - strand, within SO2944 at 3082.736 kb on + strand, within SO2944
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol% remove 3,080,271 + +0.4 3,080,315 - -1.4 3,080,357 - +0.4 3,080,657 + SO2941 0.29 +0.4 3,080,664 - SO2941 0.30 +1.3 3,080,665 + SO2941 0.30 +1.6 3,080,673 - SO2941 0.32 +0.3 3,080,713 + SO2941 0.38 +0.2 3,080,713 + SO2941 0.38 +1.3 3,080,734 + SO2941 0.41 +0.2 3,080,749 + SO2941 0.44 -0.6 3,080,750 + SO2941 0.44 -0.2 3,080,767 - SO2941 0.47 +0.4 3,080,799 - SO2941 0.52 -0.2 3,080,891 - SO2941 0.66 -0.3 3,081,054 + -0.4 3,081,087 + -0.2 3,081,098 + -0.6 3,081,106 - +0.5 3,081,205 + +1.3 3,081,223 + +0.7 3,081,237 + SO2942 0.10 +0.2 3,081,259 + SO2942 0.14 +0.1 3,081,271 + SO2942 0.16 +0.2 3,081,279 - SO2942 0.18 +0.7 3,081,393 + SO2942 0.38 +0.5 3,081,667 + SO2942 0.86 +0.3 3,081,667 + SO2942 0.86 +1.2 3,081,779 + +0.7 3,081,793 + -0.2 3,081,793 + +0.6 3,081,843 - +0.7 3,081,859 - SO2943 0.14 +0.7 3,081,916 + SO2943 0.36 +0.4 3,081,948 + SO2943 0.48 +1.3 3,082,040 - SO2943 0.84 +0.9 3,082,056 + +0.2 3,082,062 + +1.2 3,082,129 + +0.2 3,082,129 + +2.9 3,082,129 + +0.4 3,082,129 + +1.2 3,082,137 - +1.2 3,082,137 - -0.1 3,082,137 - +0.8 3,082,187 - +0.4 3,082,311 - SO2944 0.10 -0.6 3,082,353 - SO2944 0.13 +1.3 3,082,369 - SO2944 0.14 -0.4 3,082,376 - SO2944 0.14 +3.1 3,082,447 + SO2944 0.19 +1.2 3,082,506 - SO2944 0.22 -1.1 3,082,514 + SO2944 0.23 +0.7 3,082,565 - SO2944 0.26 +0.6 3,082,565 - SO2944 0.26 +0.7 3,082,607 + SO2944 0.29 +0.0 3,082,613 - SO2944 0.29 +0.8 3,082,615 - SO2944 0.29 +0.9 3,082,623 - SO2944 0.30 +1.0 3,082,687 + SO2944 0.34 +0.4 3,082,695 - SO2944 0.34 +0.3 3,082,716 - SO2944 0.36 +0.2 3,082,716 - SO2944 0.36 +2.0 3,082,716 - SO2944 0.36 +0.7 3,082,736 + SO2944 0.37 +0.3
Or see this region's nucleotide sequence