Strain Fitness in Shewanella oneidensis MR-1 around SO1530

Experiment: methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.008 vol%
1,604,347	-				-0.5
1,604,417	+				+0.7
1,604,419	-				+0.3
1,604,431	+				-1.2
1,604,431	+				+1.2
1,604,439	-				+0.5
1,604,482	-				+0.2
1,604,553	-				-1.5
1,604,573	+				-1.1
1,604,735	-	pomA	SO1529	0.29	-0.8
1,604,901	-	pomA	SO1529	0.51	-1.4
1,605,281	-				-2.4
1,605,320	-				-2.5
1,605,406	+	pomB	SO1530	0.13	-0.3
1,605,414	-	pomB	SO1530	0.14	-0.6
1,605,569	+	pomB	SO1530	0.31	-1.5
1,605,579	+	pomB	SO1530	0.32	-1.5
1,605,614	+	pomB	SO1530	0.36	-1.1
1,605,622	-	pomB	SO1530	0.37	-0.8
1,605,933	-	pomB	SO1530	0.70	-1.1
1,606,045	-	pomB	SO1530	0.82	-0.6
1,606,233	-				+0.5
1,606,293	+				-0.1
1,606,293	+				-0.5
1,606,301	-				+1.5
1,606,321	-				+1.4
1,606,457	-				+1.5
1,606,457	-				-0.3
1,606,496	+				-0.3
1,606,575	+	thiI	SO1531	0.11	+0.7
1,606,596	+	thiI	SO1531	0.13	+0.4
1,606,642	+	thiI	SO1531	0.16	-0.5
1,606,642	+	thiI	SO1531	0.16	-0.8
1,606,651	+	thiI	SO1531	0.17	-2.0
1,606,798	-	thiI	SO1531	0.27	+0.8
1,606,813	-	thiI	SO1531	0.28	-0.7
1,606,837	+	thiI	SO1531	0.29	-0.1
1,606,898	-	thiI	SO1531	0.34	-0.3
1,606,915	+	thiI	SO1531	0.35	+0.5
1,606,980	-	thiI	SO1531	0.39	-0.3
1,606,984	+	thiI	SO1531	0.40	-1.0
1,607,193	-	thiI	SO1531	0.54	+0.3