Strain Fitness in Shewanella oneidensis MR-1 around SO1276

Experiment: methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.008 vol%
1,324,631	+	gabD	SO1275	0.37	-0.3
1,324,639	-	gabD	SO1275	0.37	-0.1
1,324,754	+	gabD	SO1275	0.45	-0.2
1,324,754	+	gabD	SO1275	0.45	+0.0
1,325,032	-	gabD	SO1275	0.64	+0.3
1,325,041	+	gabD	SO1275	0.65	-0.3
1,325,216	+	gabD	SO1275	0.77	-0.4
1,325,336	-	gabD	SO1275	0.85	-0.3
1,325,414	+				-0.2
1,325,422	-				-0.2
1,325,467	+				+0.1
1,325,467	+				-1.4
1,325,472	+				+0.7
1,325,480	-				-0.2
1,325,803	-	gabT	SO1276	0.15	-0.1
1,325,858	-	gabT	SO1276	0.19	+1.2
1,325,894	-	gabT	SO1276	0.22	+0.0
1,325,941	-	gabT	SO1276	0.26	-2.3
1,325,944	+	gabT	SO1276	0.26	-0.5
1,326,090	+	gabT	SO1276	0.38	+0.5
1,326,098	-	gabT	SO1276	0.38	-0.4
1,326,125	+	gabT	SO1276	0.40	-0.3
1,326,242	-	gabT	SO1276	0.49	+1.0
1,326,283	+	gabT	SO1276	0.53	-0.1
1,326,310	+	gabT	SO1276	0.55	-0.9
1,326,448	-	gabT	SO1276	0.66	+0.8
1,326,614	+	gabT	SO1276	0.79	+0.4
1,326,661	+	gabT	SO1276	0.82	+0.6
1,326,762	+				+0.5
1,326,816	+				-0.3
1,326,875	+				-1.0
1,326,875	+				+0.8
1,326,916	+				+0.3
1,326,919	-				+1.0
1,327,015	+				+1.7
1,327,090	-				-0.8
1,327,168	+		SO1277	0.13	-1.3
1,327,328	-		SO1277	0.23	-0.4
1,327,615	-		SO1277	0.41	+0.1
1,327,722	+		SO1277	0.48	-1.1
1,327,724	-		SO1277	0.48	-0.5