Experiment: methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0965 and SO0966 overlap by 7 nucleotides SO0966 and SO0967 are separated by 66 nucleotides SO0967 and ldhA are separated by 67 nucleotides
SO0965: SO0965 - ISSod2, transposase OrfB (NCBI ptt file), at 998,573 to 999,388
SO0965
SO0966: SO0966 - ISSod2, transposase OrfA (NCBI ptt file), at 999,382 to 999,648
SO0966
SO0967: SO0967 - dienelactone hydrolase family protein (NCBI ptt file), at 999,715 to 1,000,233
SO0967
SO0968: ldhA - D-lactate dehydrogenase (NCBI ptt file), at 1,000,301 to 1,001,290
ldhA
Position (kb) 999
1000
1001 Strain fitness (log2 ratio) -2
-1
0
1 at 999.747 kb on - strand at 999.763 kb on + strand at 999.763 kb on + strand at 999.763 kb on + strand at 999.771 kb on - strand, within SO0967 at 999.771 kb on - strand, within SO0967 at 999.888 kb on + strand, within SO0967 at 999.929 kb on - strand, within SO0967 at 999.929 kb on - strand, within SO0967 at 999.953 kb on - strand, within SO0967 at 999.974 kb on - strand, within SO0967 at 1000.008 kb on + strand, within SO0967 at 1000.030 kb on - strand, within SO0967 at 1000.056 kb on + strand, within SO0967 at 1000.063 kb on + strand, within SO0967 at 1000.064 kb on - strand, within SO0967 at 1000.191 kb on - strand at 1000.243 kb on + strand at 1000.259 kb on + strand at 1000.273 kb on + strand at 1000.286 kb on + strand at 1000.394 kb on + strand at 1000.516 kb on + strand, within ldhA at 1000.596 kb on + strand, within ldhA at 1000.614 kb on - strand, within ldhA at 1000.614 kb on - strand, within ldhA at 1000.651 kb on + strand, within ldhA at 1000.666 kb on - strand, within ldhA at 1000.687 kb on - strand, within ldhA at 1000.728 kb on - strand, within ldhA at 1000.755 kb on + strand, within ldhA at 1000.755 kb on + strand, within ldhA at 1000.755 kb on + strand, within ldhA at 1000.763 kb on - strand, within ldhA at 1000.768 kb on + strand, within ldhA at 1000.768 kb on + strand, within ldhA at 1000.768 kb on + strand, within ldhA at 1000.776 kb on - strand, within ldhA at 1000.776 kb on - strand, within ldhA at 1000.776 kb on - strand, within ldhA at 1000.777 kb on - strand, within ldhA at 1000.807 kb on + strand, within ldhA at 1000.807 kb on + strand, within ldhA at 1001.026 kb on - strand, within ldhA at 1001.041 kb on + strand, within ldhA at 1001.051 kb on + strand, within ldhA at 1001.051 kb on + strand, within ldhA at 1001.059 kb on - strand, within ldhA at 1001.105 kb on + strand, within ldhA at 1001.186 kb on - strand, within ldhA
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol% remove 999,747 - -1.0 999,763 + +0.6 999,763 + +0.1 999,763 + +0.4 999,771 - SO0967 0.11 -1.0 999,771 - SO0967 0.11 -0.5 999,888 + SO0967 0.33 -0.4 999,929 - SO0967 0.41 -0.6 999,929 - SO0967 0.41 +0.5 999,953 - SO0967 0.46 -1.3 999,974 - SO0967 0.50 -0.5 1,000,008 + SO0967 0.56 -0.3 1,000,030 - SO0967 0.61 +0.2 1,000,056 + SO0967 0.66 -0.6 1,000,063 + SO0967 0.67 +0.2 1,000,064 - SO0967 0.67 -0.3 1,000,191 - +0.4 1,000,243 + -0.2 1,000,259 + +0.1 1,000,273 + -0.4 1,000,286 + -0.6 1,000,394 + -0.2 1,000,516 + ldhA SO0968 0.22 +1.3 1,000,596 + ldhA SO0968 0.30 +0.3 1,000,614 - ldhA SO0968 0.32 +0.3 1,000,614 - ldhA SO0968 0.32 -2.6 1,000,651 + ldhA SO0968 0.35 -0.2 1,000,666 - ldhA SO0968 0.37 +0.3 1,000,687 - ldhA SO0968 0.39 +0.6 1,000,728 - ldhA SO0968 0.43 -0.4 1,000,755 + ldhA SO0968 0.46 -0.3 1,000,755 + ldhA SO0968 0.46 +0.4 1,000,755 + ldhA SO0968 0.46 +0.1 1,000,763 - ldhA SO0968 0.47 +0.3 1,000,768 + ldhA SO0968 0.47 +0.6 1,000,768 + ldhA SO0968 0.47 -0.2 1,000,768 + ldhA SO0968 0.47 -0.6 1,000,776 - ldhA SO0968 0.48 +0.8 1,000,776 - ldhA SO0968 0.48 +0.8 1,000,776 - ldhA SO0968 0.48 +0.7 1,000,777 - ldhA SO0968 0.48 -0.2 1,000,807 + ldhA SO0968 0.51 -1.0 1,000,807 + ldhA SO0968 0.51 +0.5 1,001,026 - ldhA SO0968 0.73 -0.0 1,001,041 + ldhA SO0968 0.75 -1.4 1,001,051 + ldhA SO0968 0.76 -0.1 1,001,051 + ldhA SO0968 0.76 +0.9 1,001,059 - ldhA SO0968 0.77 -2.2 1,001,105 + ldhA SO0968 0.81 -0.1 1,001,186 - ldhA SO0968 0.89 -0.7
Or see this region's nucleotide sequence