Experiment: methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0894 and SO0895 are separated by 576 nucleotides SO0895 and SO0896 are separated by 57 nucleotides SO0896 and dbpA are separated by 39 nucleotides
SO0894: SO0894 - hypothetical protein (NCBI ptt file), at 922,961 to 923,062
SO0894
SO0895: SO0895 - pirin family protein (NCBI ptt file), at 923,639 to 924,496
SO0895
SO0896: SO0896 - hypothetical protein (NCBI ptt file), at 924,554 to 924,769
SO0896
SO0897: dbpA - ATP-dependent RNA helicase DbpA (NCBI ptt file), at 924,809 to 926,185
dbpA
Position (kb) 923
924
925 Strain fitness (log2 ratio) -2
-1
0
1 at 922.814 kb on - strand at 922.814 kb on - strand at 922.840 kb on - strand at 922.850 kb on - strand at 922.860 kb on - strand at 922.860 kb on - strand at 922.874 kb on + strand at 923.069 kb on + strand at 923.069 kb on + strand at 923.072 kb on - strand at 923.077 kb on - strand at 923.206 kb on - strand at 923.214 kb on - strand at 923.247 kb on + strand at 923.277 kb on + strand at 923.277 kb on + strand at 923.285 kb on - strand at 923.285 kb on - strand at 923.287 kb on + strand at 923.290 kb on + strand at 923.292 kb on + strand at 923.303 kb on - strand at 923.315 kb on + strand at 923.609 kb on + strand at 923.609 kb on + strand at 923.609 kb on + strand at 923.609 kb on + strand at 923.609 kb on + strand at 923.609 kb on + strand at 923.609 kb on + strand at 923.610 kb on + strand at 923.617 kb on - strand at 923.617 kb on - strand at 923.617 kb on - strand at 923.617 kb on - strand at 923.617 kb on - strand at 923.617 kb on - strand at 923.728 kb on + strand, within SO0895 at 923.830 kb on - strand, within SO0895 at 923.831 kb on - strand, within SO0895 at 923.847 kb on + strand, within SO0895 at 923.847 kb on + strand, within SO0895 at 923.847 kb on + strand, within SO0895 at 923.847 kb on + strand, within SO0895 at 923.855 kb on - strand, within SO0895 at 923.959 kb on + strand, within SO0895 at 924.049 kb on - strand, within SO0895 at 924.077 kb on + strand, within SO0895 at 924.093 kb on - strand, within SO0895 at 924.093 kb on - strand, within SO0895 at 924.275 kb on + strand, within SO0895 at 924.276 kb on - strand, within SO0895 at 924.277 kb on - strand, within SO0895 at 924.304 kb on + strand, within SO0895 at 924.337 kb on + strand, within SO0895 at 924.337 kb on + strand, within SO0895 at 924.345 kb on - strand, within SO0895 at 924.345 kb on - strand, within SO0895 at 924.345 kb on - strand, within SO0895 at 924.379 kb on + strand, within SO0895 at 924.531 kb on + strand at 924.532 kb on + strand at 924.592 kb on - strand, within SO0896 at 924.774 kb on - strand at 924.892 kb on + strand at 924.925 kb on + strand at 924.940 kb on + strand at 924.970 kb on + strand, within dbpA at 924.976 kb on - strand, within dbpA at 925.023 kb on + strand, within dbpA at 925.023 kb on + strand, within dbpA at 925.023 kb on + strand, within dbpA at 925.023 kb on + strand, within dbpA at 925.031 kb on - strand, within dbpA at 925.031 kb on - strand, within dbpA at 925.031 kb on - strand, within dbpA at 925.188 kb on + strand, within dbpA at 925.196 kb on - strand, within dbpA at 925.196 kb on - strand, within dbpA at 925.321 kb on + strand, within dbpA at 925.399 kb on + strand, within dbpA at 925.407 kb on - strand, within dbpA at 925.414 kb on + strand, within dbpA at 925.414 kb on + strand, within dbpA at 925.422 kb on - strand, within dbpA at 925.422 kb on - strand, within dbpA
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol% remove 922,814 - +0.6 922,814 - +0.0 922,840 - -0.1 922,850 - -0.8 922,860 - -0.1 922,860 - +0.4 922,874 + +0.1 923,069 + +0.7 923,069 + -0.8 923,072 - -0.6 923,077 - -0.0 923,206 - +0.4 923,214 - -0.3 923,247 + +0.3 923,277 + +1.1 923,277 + +1.6 923,285 - -0.4 923,285 - +0.2 923,287 + -0.3 923,290 + -0.0 923,292 + +0.7 923,303 - -0.3 923,315 + +0.5 923,609 + +0.7 923,609 + +0.2 923,609 + -0.7 923,609 + -0.3 923,609 + +0.0 923,609 + -0.2 923,609 + +0.7 923,610 + -0.2 923,617 - -0.1 923,617 - -1.4 923,617 - -0.4 923,617 - +1.4 923,617 - +0.3 923,617 - -1.7 923,728 + SO0895 0.10 +0.3 923,830 - SO0895 0.22 +0.2 923,831 - SO0895 0.22 -0.3 923,847 + SO0895 0.24 -2.1 923,847 + SO0895 0.24 +0.9 923,847 + SO0895 0.24 +0.4 923,847 + SO0895 0.24 +1.3 923,855 - SO0895 0.25 +1.7 923,959 + SO0895 0.37 +0.6 924,049 - SO0895 0.48 +0.3 924,077 + SO0895 0.51 -1.1 924,093 - SO0895 0.53 +0.7 924,093 - SO0895 0.53 -0.5 924,275 + SO0895 0.74 -0.5 924,276 - SO0895 0.74 -0.8 924,277 - SO0895 0.74 +0.9 924,304 + SO0895 0.78 -0.7 924,337 + SO0895 0.81 +0.5 924,337 + SO0895 0.81 +0.9 924,345 - SO0895 0.82 +0.2 924,345 - SO0895 0.82 +1.2 924,345 - SO0895 0.82 -0.0 924,379 + SO0895 0.86 -0.3 924,531 + -0.6 924,532 + -0.3 924,592 - SO0896 0.18 +0.4 924,774 - +0.5 924,892 + -1.6 924,925 + +1.0 924,940 + -0.4 924,970 + dbpA SO0897 0.12 -0.1 924,976 - dbpA SO0897 0.12 +0.2 925,023 + dbpA SO0897 0.16 +0.2 925,023 + dbpA SO0897 0.16 -1.4 925,023 + dbpA SO0897 0.16 +0.5 925,023 + dbpA SO0897 0.16 +0.0 925,031 - dbpA SO0897 0.16 +0.4 925,031 - dbpA SO0897 0.16 -0.8 925,031 - dbpA SO0897 0.16 -0.3 925,188 + dbpA SO0897 0.28 +0.3 925,196 - dbpA SO0897 0.28 -0.4 925,196 - dbpA SO0897 0.28 -0.2 925,321 + dbpA SO0897 0.37 +0.6 925,399 + dbpA SO0897 0.43 -1.0 925,407 - dbpA SO0897 0.43 -0.6 925,414 + dbpA SO0897 0.44 +0.2 925,414 + dbpA SO0897 0.44 -0.3 925,422 - dbpA SO0897 0.45 +0.4 925,422 - dbpA SO0897 0.45 -2.0
Or see this region's nucleotide sequence