Experiment: methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjeF and SO0599 are separated by 80 nucleotides SO0599 and amiB are separated by 8 nucleotides amiB and mutL are separated by 13 nucleotides
SO0598: yjeF - yjeF protein (NCBI ptt file), at 623,398 to 624,897
yjeF
SO0599: SO0599 - conserved hypothetical protein TIGR00150 (NCBI ptt file), at 624,978 to 625,436
SO0599
SO0600: amiB - N-acetylmuramoyl-L-alanine amidase (NCBI ptt file), at 625,445 to 626,836
amiB
SO0601: mutL - DNA mismatch repair protein MutL (NCBI ptt file), at 626,850 to 628,745
mutL
Position (kb) 625
626
627 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 624.542 kb on + strand, within yjeF at 624.565 kb on - strand, within yjeF at 624.567 kb on + strand, within yjeF at 624.575 kb on - strand, within yjeF at 624.619 kb on - strand, within yjeF at 624.629 kb on - strand, within yjeF at 624.683 kb on + strand, within yjeF at 624.790 kb on + strand at 624.790 kb on + strand at 624.790 kb on + strand at 624.790 kb on + strand at 624.790 kb on + strand at 624.798 kb on - strand at 624.820 kb on + strand at 624.891 kb on + strand at 624.906 kb on + strand at 625.518 kb on + strand at 625.543 kb on + strand at 625.865 kb on - strand, within amiB at 625.886 kb on - strand, within amiB at 626.364 kb on + strand, within amiB at 626.364 kb on + strand, within amiB at 626.364 kb on + strand, within amiB at 626.364 kb on + strand, within amiB at 626.431 kb on + strand, within amiB at 626.663 kb on + strand, within amiB at 626.898 kb on + strand at 626.920 kb on + strand at 626.958 kb on - strand at 626.964 kb on - strand at 626.998 kb on + strand at 626.998 kb on + strand at 627.062 kb on - strand, within mutL at 627.102 kb on - strand, within mutL at 627.104 kb on + strand, within mutL at 627.112 kb on - strand, within mutL at 627.190 kb on + strand, within mutL at 627.190 kb on + strand, within mutL at 627.198 kb on - strand, within mutL at 627.200 kb on + strand, within mutL at 627.280 kb on + strand, within mutL at 627.370 kb on + strand, within mutL at 627.384 kb on + strand, within mutL at 627.546 kb on + strand, within mutL at 627.588 kb on + strand, within mutL at 627.588 kb on + strand, within mutL at 627.588 kb on - strand, within mutL at 627.708 kb on - strand, within mutL
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol% remove 624,542 + yjeF SO0598 0.76 -0.2 624,565 - yjeF SO0598 0.78 +0.9 624,567 + yjeF SO0598 0.78 +0.5 624,575 - yjeF SO0598 0.78 +0.4 624,619 - yjeF SO0598 0.81 -1.5 624,629 - yjeF SO0598 0.82 -0.8 624,683 + yjeF SO0598 0.86 -0.4 624,790 + +0.4 624,790 + -0.8 624,790 + +0.4 624,790 + +0.4 624,790 + +1.6 624,798 - +0.3 624,820 + -0.5 624,891 + -0.8 624,906 + -0.2 625,518 + -3.3 625,543 + -2.1 625,865 - amiB SO0600 0.30 -2.7 625,886 - amiB SO0600 0.32 -1.4 626,364 + amiB SO0600 0.66 -2.2 626,364 + amiB SO0600 0.66 -2.0 626,364 + amiB SO0600 0.66 -2.2 626,364 + amiB SO0600 0.66 -1.9 626,431 + amiB SO0600 0.71 -2.8 626,663 + amiB SO0600 0.88 +0.2 626,898 + -0.2 626,920 + +0.4 626,958 - -0.4 626,964 - +1.0 626,998 + +1.2 626,998 + +0.0 627,062 - mutL SO0601 0.11 +0.4 627,102 - mutL SO0601 0.13 +0.1 627,104 + mutL SO0601 0.13 -0.1 627,112 - mutL SO0601 0.14 -0.2 627,190 + mutL SO0601 0.18 -0.5 627,190 + mutL SO0601 0.18 +0.0 627,198 - mutL SO0601 0.18 -0.3 627,200 + mutL SO0601 0.18 +1.2 627,280 + mutL SO0601 0.23 +0.1 627,370 + mutL SO0601 0.27 -1.0 627,384 + mutL SO0601 0.28 -0.5 627,546 + mutL SO0601 0.37 -0.8 627,588 + mutL SO0601 0.39 +0.9 627,588 + mutL SO0601 0.39 -0.3 627,588 - mutL SO0601 0.39 -0.0 627,708 - mutL SO0601 0.45 +1.1
Or see this region's nucleotide sequence