Strain Fitness in Shewanella oneidensis MR-1 around SO0103

Experiment: methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.008 vol%
111,675	+				-1.3
111,675	-				-0.9
111,711	+				-0.6
111,756	+				-1.3
111,764	-				+0.1
111,787	-				-0.7
111,823	+	fdnH	SO0102	0.11	+0.2
111,841	+	fdnH	SO0102	0.13	+0.2
111,871	+	fdnH	SO0102	0.17	+0.1
111,871	+	fdnH	SO0102	0.17	+0.2
111,871	+	fdnH	SO0102	0.17	+1.1
111,941	+	fdnH	SO0102	0.24	-0.8
112,014	+	fdnH	SO0102	0.32	+0.7
112,022	-	fdnH	SO0102	0.33	+1.1
112,022	-	fdnH	SO0102	0.33	+1.4
112,163	+	fdnH	SO0102	0.48	-0.2
112,185	+	fdnH	SO0102	0.51	-0.3
112,212	-	fdnH	SO0102	0.54	+1.6
112,247	+	fdnH	SO0102	0.58	+1.0
112,247	+	fdnH	SO0102	0.58	-0.7
112,250	-	fdnH	SO0102	0.58	-0.1
112,293	+	fdnH	SO0102	0.63	-1.7
112,355	+	fdnH	SO0102	0.69	+0.1
112,355	+	fdnH	SO0102	0.69	+0.1
112,368	+	fdnH	SO0102	0.71	+0.1
112,368	+	fdnH	SO0102	0.71	+0.1
112,375	-	fdnH	SO0102	0.72	-1.4
112,423	-	fdnH	SO0102	0.77	+0.6
112,423	-	fdnH	SO0102	0.77	-0.2
112,467	-	fdnH	SO0102	0.82	-0.6
112,521	+	fdnH	SO0102	0.88	-0.9
112,597	+				-1.0
112,598	+				-0.1
112,665	+				+0.2
112,665	+				-0.3
112,688	+				-0.4
112,825	+	fdnI	SO0103	0.30	-0.0
112,831	-	fdnI	SO0103	0.31	-0.2
112,839	-	fdnI	SO0103	0.32	-0.4
112,990	-	fdnI	SO0103	0.56	-0.1
112,990	-	fdnI	SO0103	0.56	+0.2
113,024	-	fdnI	SO0103	0.61	+0.7
113,060	-	fdnI	SO0103	0.67	-0.1
113,078	+	fdnI	SO0103	0.70	-1.0
113,086	-	fdnI	SO0103	0.71	-0.0
113,086	-				-0.1
113,165	+	fdnI	SO0103	0.83	+0.2
113,165	+	fdnI	SO0103	0.83	-1.4
113,171	-	fdnI	SO0103	0.84	-1.1
113,200	+	fdnI	SO0103	0.89	-1.8
113,299	+				+0.8
113,332	+				+1.2
113,340	-				+1.8
113,349	+				-1.0
113,349	+				-1.0
113,349	+				-0.2
113,349	+				-0.2
113,349	+				+1.1
113,357	-				+0.8
113,357	-				-0.6
113,357	-				-0.3
113,364	+	fdhE	SO0104	0.10	-0.4
113,428	-	fdhE	SO0104	0.17	+0.3
113,428	-	fdhE	SO0104	0.17	-0.6
113,472	+	fdhE	SO0104	0.22	+0.3
113,583	-	fdhE	SO0104	0.34	-1.9
113,608	+	fdhE	SO0104	0.37	+0.4
113,645	+	fdhE	SO0104	0.41	+0.4
113,669	-	fdhE	SO0104	0.44	+1.9
113,694	-	fdhE	SO0104	0.46	+0.4
113,770	-	fdhE	SO0104	0.55	-1.1
113,780	+	fdhE	SO0104	0.56	+1.0
113,790	+	fdhE	SO0104	0.57	+0.4
113,803	-	fdhE	SO0104	0.58	-0.7
113,830	+	fdhE	SO0104	0.61	-0.1
113,870	-	fdhE	SO0104	0.66	+0.5
113,872	+	fdhE	SO0104	0.66	-1.7
113,880	-	fdhE	SO0104	0.67	+0.9
113,886	+	fdhE	SO0104	0.68	-0.1
113,929	+	fdhE	SO0104	0.72	+0.2
113,949	+	fdhE	SO0104	0.74	-0.1
113,949	+	fdhE	SO0104	0.74	+0.7
113,949	+	fdhE	SO0104	0.74	+0.1
113,957	-	fdhE	SO0104	0.75	+0.7
113,981	+	fdhE	SO0104	0.78	-1.2
114,009	-	fdhE	SO0104	0.81	+0.0
114,104	+				-0.0
114,117	+				+0.1
114,133	-				-0.2
114,149	-				+0.6
114,203	-				+0.3
114,262	+				-1.1
114,268	+				-0.7
114,268	+				-2.1
114,268	+				+0.5