Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_922 and HP15_923 are separated by 173 nucleotides HP15_923 and HP15_924 overlap by 4 nucleotides HP15_924 and HP15_925 are separated by 129 nucleotides
HP15_922: HP15_922 - proline racemase, at 935,918 to 936,979
_922
HP15_923: HP15_923 - acetyl-coA synthetase/AMP-(fatty) acid ligase, at 937,153 to 938,802
_923
HP15_924: HP15_924 - thioesterase family protein, at 938,799 to 939,215
_924
HP15_925: HP15_925 - alpha/beta hydrolase fold protein, at 939,345 to 940,022
_925
Position (kb) 937
938
939 Strain fitness (log2 ratio) -2
-1
0
1 at 936.300 kb on - strand, within HP15_922 at 936.303 kb on + strand, within HP15_922 at 936.357 kb on + strand, within HP15_922 at 936.438 kb on + strand, within HP15_922 at 936.532 kb on + strand, within HP15_922 at 936.540 kb on - strand, within HP15_922 at 936.826 kb on + strand, within HP15_922 at 936.860 kb on + strand, within HP15_922 at 936.867 kb on - strand, within HP15_922 at 936.872 kb on - strand, within HP15_922 at 936.921 kb on + strand at 936.924 kb on - strand at 937.011 kb on - strand at 937.116 kb on + strand at 937.117 kb on - strand at 937.117 kb on - strand at 937.117 kb on - strand at 937.117 kb on - strand at 937.301 kb on - strand at 937.447 kb on - strand, within HP15_923 at 937.545 kb on + strand, within HP15_923 at 937.583 kb on + strand, within HP15_923 at 937.613 kb on - strand, within HP15_923 at 937.655 kb on + strand, within HP15_923 at 937.772 kb on - strand, within HP15_923 at 937.772 kb on - strand, within HP15_923 at 937.803 kb on - strand, within HP15_923 at 938.070 kb on - strand, within HP15_923 at 938.112 kb on - strand, within HP15_923 at 938.112 kb on - strand, within HP15_923 at 938.119 kb on - strand, within HP15_923 at 938.237 kb on + strand, within HP15_923 at 938.242 kb on + strand, within HP15_923 at 938.370 kb on - strand, within HP15_923 at 938.375 kb on - strand, within HP15_923 at 938.377 kb on + strand, within HP15_923 at 938.472 kb on + strand, within HP15_923 at 938.485 kb on + strand, within HP15_923 at 938.509 kb on - strand, within HP15_923 at 938.519 kb on - strand, within HP15_923 at 938.618 kb on - strand, within HP15_923 at 938.633 kb on + strand, within HP15_923 at 938.659 kb on + strand at 938.691 kb on - strand at 938.691 kb on - strand at 938.697 kb on - strand at 938.730 kb on + strand at 938.730 kb on + strand at 938.873 kb on + strand, within HP15_924 at 938.879 kb on + strand, within HP15_924 at 938.935 kb on - strand, within HP15_924 at 938.940 kb on - strand, within HP15_924 at 939.007 kb on + strand, within HP15_924 at 939.084 kb on + strand, within HP15_924 at 939.092 kb on - strand, within HP15_924 at 939.092 kb on - strand, within HP15_924 at 939.092 kb on - strand, within HP15_924 at 939.123 kb on - strand, within HP15_924 at 939.138 kb on + strand, within HP15_924 at 939.149 kb on + strand, within HP15_924 at 939.157 kb on + strand, within HP15_924 at 939.265 kb on - strand at 939.335 kb on - strand at 939.408 kb on + strand at 939.416 kb on - strand, within HP15_925 at 939.423 kb on - strand, within HP15_925 at 939.453 kb on + strand, within HP15_925 at 939.579 kb on + strand, within HP15_925 at 939.620 kb on + strand, within HP15_925 at 939.628 kb on - strand, within HP15_925 at 939.628 kb on - strand, within HP15_925 at 939.628 kb on - strand, within HP15_925 at 939.641 kb on - strand, within HP15_925 at 939.641 kb on - strand, within HP15_925 at 939.707 kb on + strand, within HP15_925
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 936,300 - HP15_922 0.36 +0.6 936,303 + HP15_922 0.36 -0.8 936,357 + HP15_922 0.41 -0.4 936,438 + HP15_922 0.49 +0.4 936,532 + HP15_922 0.58 +0.2 936,540 - HP15_922 0.59 -0.1 936,826 + HP15_922 0.85 -1.0 936,860 + HP15_922 0.89 +0.6 936,867 - HP15_922 0.89 +0.0 936,872 - HP15_922 0.90 -0.1 936,921 + -1.7 936,924 - +0.3 937,011 - -0.2 937,116 + +0.6 937,117 - -0.2 937,117 - +0.4 937,117 - +0.5 937,117 - +0.1 937,301 - -0.1 937,447 - HP15_923 0.18 +0.4 937,545 + HP15_923 0.24 -0.4 937,583 + HP15_923 0.26 +0.9 937,613 - HP15_923 0.28 -0.1 937,655 + HP15_923 0.30 +0.2 937,772 - HP15_923 0.38 +0.6 937,772 - HP15_923 0.38 -1.1 937,803 - HP15_923 0.39 -1.0 938,070 - HP15_923 0.56 -0.8 938,112 - HP15_923 0.58 +0.1 938,112 - HP15_923 0.58 -0.0 938,119 - HP15_923 0.59 +0.5 938,237 + HP15_923 0.66 -0.9 938,242 + HP15_923 0.66 +0.5 938,370 - HP15_923 0.74 -0.4 938,375 - HP15_923 0.74 -0.4 938,377 + HP15_923 0.74 -0.3 938,472 + HP15_923 0.80 -0.2 938,485 + HP15_923 0.81 +0.5 938,509 - HP15_923 0.82 -0.5 938,519 - HP15_923 0.83 -0.4 938,618 - HP15_923 0.89 -0.3 938,633 + HP15_923 0.90 -0.2 938,659 + +0.6 938,691 - +0.8 938,691 - +0.5 938,697 - +0.2 938,730 + +0.3 938,730 + +0.5 938,873 + HP15_924 0.18 +0.4 938,879 + HP15_924 0.19 -0.3 938,935 - HP15_924 0.33 +0.6 938,940 - HP15_924 0.34 +0.1 939,007 + HP15_924 0.50 -0.2 939,084 + HP15_924 0.68 +0.5 939,092 - HP15_924 0.70 +0.2 939,092 - HP15_924 0.70 -0.0 939,092 - HP15_924 0.70 -0.3 939,123 - HP15_924 0.78 -0.1 939,138 + HP15_924 0.81 +0.1 939,149 + HP15_924 0.84 -0.1 939,157 + HP15_924 0.86 -1.8 939,265 - -0.2 939,335 - +0.6 939,408 + -0.2 939,416 - HP15_925 0.10 -0.1 939,423 - HP15_925 0.12 -0.6 939,453 + HP15_925 0.16 -0.2 939,579 + HP15_925 0.35 -0.7 939,620 + HP15_925 0.41 +0.1 939,628 - HP15_925 0.42 -0.4 939,628 - HP15_925 0.42 +0.8 939,628 - HP15_925 0.42 +0.8 939,641 - HP15_925 0.44 -0.1 939,641 - HP15_925 0.44 +0.9 939,707 + HP15_925 0.53 +0.1
Or see this region's nucleotide sequence