Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04550

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04540 and PGA1_c04550 are separated by 29 nucleotidesPGA1_c04550 and PGA1_c04560 are separated by 146 nucleotides PGA1_c04540: PGA1_c04540 - putative d-galactonate dehydratase, at 446,423 to 447,655 _c04540 PGA1_c04550: PGA1_c04550 - putative formaldehyde dehydrogenase, at 447,685 to 448,776 _c04550 PGA1_c04560: PGA1_c04560 - putative fumarate lyase, at 448,923 to 450,272 _c04560 Position (kb) 447 448 449Strain fitness (log2 ratio) -2 -1 0 1at 446.744 kb on + strand, within PGA1_c04540at 446.794 kb on - strand, within PGA1_c04540at 446.958 kb on + strand, within PGA1_c04540at 446.961 kb on - strand, within PGA1_c04540at 446.961 kb on - strand, within PGA1_c04540at 447.038 kb on + strand, within PGA1_c04540at 447.038 kb on + strand, within PGA1_c04540at 447.043 kb on + strand, within PGA1_c04540at 447.061 kb on - strand, within PGA1_c04540at 447.169 kb on + strand, within PGA1_c04540at 447.171 kb on + strand, within PGA1_c04540at 447.171 kb on + strand, within PGA1_c04540at 447.222 kb on + strand, within PGA1_c04540at 447.222 kb on - strand, within PGA1_c04540at 447.222 kb on - strand, within PGA1_c04540at 447.235 kb on + strand, within PGA1_c04540at 447.269 kb on + strand, within PGA1_c04540at 447.326 kb on + strand, within PGA1_c04540at 447.346 kb on + strand, within PGA1_c04540at 447.394 kb on + strand, within PGA1_c04540at 447.394 kb on + strand, within PGA1_c04540at 447.402 kb on - strand, within PGA1_c04540at 447.402 kb on - strand, within PGA1_c04540at 447.430 kb on + strand, within PGA1_c04540at 447.502 kb on - strand, within PGA1_c04540at 447.502 kb on - strand, within PGA1_c04540at 447.531 kb on + strand, within PGA1_c04540at 447.593 kb on + strandat 447.600 kb on + strandat 447.605 kb on + strandat 447.675 kb on + strandat 447.675 kb on + strandat 447.683 kb on + strandat 447.683 kb on - strandat 447.683 kb on - strandat 447.712 kb on - strandat 447.746 kb on + strandat 447.746 kb on + strandat 447.754 kb on - strandat 447.754 kb on - strandat 447.756 kb on + strandat 447.756 kb on + strandat 447.756 kb on + strandat 447.764 kb on - strandat 447.764 kb on - strandat 447.764 kb on - strandat 447.802 kb on + strand, within PGA1_c04550at 447.810 kb on + strand, within PGA1_c04550at 447.815 kb on - strand, within PGA1_c04550at 447.815 kb on - strand, within PGA1_c04550at 447.817 kb on + strand, within PGA1_c04550at 447.843 kb on + strand, within PGA1_c04550at 447.869 kb on - strand, within PGA1_c04550at 447.871 kb on + strand, within PGA1_c04550at 447.877 kb on + strand, within PGA1_c04550at 447.879 kb on - strand, within PGA1_c04550at 447.880 kb on - strand, within PGA1_c04550at 447.914 kb on - strand, within PGA1_c04550at 447.970 kb on - strand, within PGA1_c04550at 447.994 kb on + strand, within PGA1_c04550at 447.994 kb on + strand, within PGA1_c04550at 448.002 kb on - strand, within PGA1_c04550at 448.025 kb on + strand, within PGA1_c04550at 448.054 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.092 kb on - strand, within PGA1_c04550at 448.092 kb on - strand, within PGA1_c04550at 448.092 kb on - strand, within PGA1_c04550at 448.092 kb on - strand, within PGA1_c04550at 448.092 kb on - strand, within PGA1_c04550at 448.183 kb on + strand, within PGA1_c04550at 448.219 kb on + strand, within PGA1_c04550at 448.224 kb on + strand, within PGA1_c04550at 448.248 kb on + strand, within PGA1_c04550at 448.256 kb on + strand, within PGA1_c04550at 448.271 kb on - strand, within PGA1_c04550at 448.294 kb on - strand, within PGA1_c04550at 448.297 kb on + strand, within PGA1_c04550at 448.302 kb on - strand, within PGA1_c04550at 448.382 kb on + strand, within PGA1_c04550at 448.412 kb on + strand, within PGA1_c04550at 448.448 kb on - strand, within PGA1_c04550at 448.521 kb on + strand, within PGA1_c04550at 448.531 kb on + strand, within PGA1_c04550at 448.535 kb on - strand, within PGA1_c04550at 448.541 kb on + strand, within PGA1_c04550at 448.546 kb on + strand, within PGA1_c04550at 448.573 kb on + strand, within PGA1_c04550at 448.607 kb on + strand, within PGA1_c04550at 448.632 kb on + strand, within PGA1_c04550at 448.632 kb on + strand, within PGA1_c04550at 448.640 kb on - strand, within PGA1_c04550at 448.804 kb on + strandat 448.813 kb on + strandat 448.816 kb on - strandat 448.916 kb on - strandat 449.029 kb on - strandat 449.077 kb on - strand, within PGA1_c04560at 449.077 kb on - strand, within PGA1_c04560at 449.084 kb on + strand, within PGA1_c04560at 449.087 kb on - strand, within PGA1_c04560at 449.124 kb on - strand, within PGA1_c04560at 449.129 kb on - strand, within PGA1_c04560at 449.165 kb on - strand, within PGA1_c04560at 449.199 kb on - strand, within PGA1_c04560at 449.200 kb on - strand, within PGA1_c04560at 449.200 kb on - strand, within PGA1_c04560at 449.337 kb on - strand, within PGA1_c04560at 449.358 kb on - strand, within PGA1_c04560at 449.363 kb on - strand, within PGA1_c04560at 449.370 kb on - strand, within PGA1_c04560at 449.397 kb on + strand, within PGA1_c04560at 449.410 kb on - strand, within PGA1_c04560at 449.456 kb on + strand, within PGA1_c04560at 449.463 kb on - strand, within PGA1_c04560at 449.464 kb on - strand, within PGA1_c04560at 449.495 kb on + strand, within PGA1_c04560at 449.495 kb on + strand, within PGA1_c04560at 449.495 kb on + strand, within PGA1_c04560at 449.495 kb on + strand, within PGA1_c04560at 449.495 kb on + strand, within PGA1_c04560at 449.495 kb on + strand, within PGA1_c04560at 449.495 kb on + strand, within PGA1_c04560at 449.503 kb on - strand, within PGA1_c04560at 449.503 kb on - strand, within PGA1_c04560at 449.503 kb on - strand, within PGA1_c04560at 449.530 kb on + strand, within PGA1_c04560at 449.530 kb on + strand, within PGA1_c04560at 449.535 kb on + strand, within PGA1_c04560at 449.542 kb on - strand, within PGA1_c04560at 449.543 kb on - strand, within PGA1_c04560at 449.544 kb on + strand, within PGA1_c04560at 449.548 kb on - strand, within PGA1_c04560at 449.648 kb on + strand, within PGA1_c04560at 449.706 kb on + strand, within PGA1_c04560at 449.714 kb on - strand, within PGA1_c04560at 449.751 kb on - strand, within PGA1_c04560

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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446,744 + PGA1_c04540 0.26 +0.2
446,794 - PGA1_c04540 0.30 +0.3
446,958 + PGA1_c04540 0.43 -0.7
446,961 - PGA1_c04540 0.44 -0.1
446,961 - PGA1_c04540 0.44 -2.0
447,038 + PGA1_c04540 0.50 -0.2
447,038 + PGA1_c04540 0.50 -0.8
447,043 + PGA1_c04540 0.50 -2.3
447,061 - PGA1_c04540 0.52 -0.5
447,169 + PGA1_c04540 0.61 -1.0
447,171 + PGA1_c04540 0.61 -0.3
447,171 + PGA1_c04540 0.61 +0.9
447,222 + PGA1_c04540 0.65 -0.8
447,222 - PGA1_c04540 0.65 -0.3
447,222 - PGA1_c04540 0.65 +0.2
447,235 + PGA1_c04540 0.66 +0.2
447,269 + PGA1_c04540 0.69 +1.4
447,326 + PGA1_c04540 0.73 -0.6
447,346 + PGA1_c04540 0.75 -0.1
447,394 + PGA1_c04540 0.79 -2.0
447,394 + PGA1_c04540 0.79 +0.8
447,402 - PGA1_c04540 0.79 -0.5
447,402 - PGA1_c04540 0.79 -0.8
447,430 + PGA1_c04540 0.82 -0.1
447,502 - PGA1_c04540 0.88 -0.4
447,502 - PGA1_c04540 0.88 -1.1
447,531 + PGA1_c04540 0.90 +0.3
447,593 + +0.5
447,600 + +0.5
447,605 + -0.1
447,675 + -0.6
447,675 + -1.0
447,683 + +0.1
447,683 - -0.4
447,683 - -0.5
447,712 - -0.2
447,746 + +0.6
447,746 + -0.4
447,754 - +0.2
447,754 - -0.1
447,756 + +1.0
447,756 + -2.1
447,756 + +1.1
447,764 - -1.2
447,764 - +0.1
447,764 - -0.4
447,802 + PGA1_c04550 0.11 -0.3
447,810 + PGA1_c04550 0.11 -0.2
447,815 - PGA1_c04550 0.12 +0.8
447,815 - PGA1_c04550 0.12 -0.6
447,817 + PGA1_c04550 0.12 -0.3
447,843 + PGA1_c04550 0.14 -1.4
447,869 - PGA1_c04550 0.17 +0.2
447,871 + PGA1_c04550 0.17 +0.8
447,877 + PGA1_c04550 0.18 -1.0
447,879 - PGA1_c04550 0.18 -0.4
447,880 - PGA1_c04550 0.18 +1.3
447,914 - PGA1_c04550 0.21 +0.0
447,970 - PGA1_c04550 0.26 +1.0
447,994 + PGA1_c04550 0.28 +0.6
447,994 + PGA1_c04550 0.28 -0.2
448,002 - PGA1_c04550 0.29 -0.7
448,025 + PGA1_c04550 0.31 -0.6
448,054 + PGA1_c04550 0.34 -0.5
448,084 + PGA1_c04550 0.37 -0.2
448,084 + PGA1_c04550 0.37 +0.0
448,084 + PGA1_c04550 0.37 -2.1
448,084 + PGA1_c04550 0.37 -0.4
448,084 + PGA1_c04550 0.37 -1.3
448,084 + PGA1_c04550 0.37 +0.8
448,084 + PGA1_c04550 0.37 -1.9
448,084 + PGA1_c04550 0.37 +0.9
448,084 + PGA1_c04550 0.37 -1.0
448,084 + PGA1_c04550 0.37 -0.7
448,084 + PGA1_c04550 0.37 -0.0
448,084 + PGA1_c04550 0.37 +0.3
448,084 + PGA1_c04550 0.37 -1.3
448,084 + PGA1_c04550 0.37 -0.5
448,092 - PGA1_c04550 0.37 -0.5
448,092 - PGA1_c04550 0.37 -0.7
448,092 - PGA1_c04550 0.37 -0.8
448,092 - PGA1_c04550 0.37 -1.5
448,092 - PGA1_c04550 0.37 +0.3
448,183 + PGA1_c04550 0.46 +0.6
448,219 + PGA1_c04550 0.49 +0.5
448,224 + PGA1_c04550 0.49 -0.7
448,248 + PGA1_c04550 0.52 -1.1
448,256 + PGA1_c04550 0.52 +1.0
448,271 - PGA1_c04550 0.54 -0.6
448,294 - PGA1_c04550 0.56 -0.2
448,297 + PGA1_c04550 0.56 -0.3
448,302 - PGA1_c04550 0.57 -0.6
448,382 + PGA1_c04550 0.64 +0.9
448,412 + PGA1_c04550 0.67 +0.6
448,448 - PGA1_c04550 0.70 +0.6
448,521 + PGA1_c04550 0.77 +0.3
448,531 + PGA1_c04550 0.77 -1.7
448,535 - PGA1_c04550 0.78 +0.1
448,541 + PGA1_c04550 0.78 +0.8
448,546 + PGA1_c04550 0.79 +0.1
448,573 + PGA1_c04550 0.81 +0.5
448,607 + PGA1_c04550 0.84 +1.1
448,632 + PGA1_c04550 0.87 -2.5
448,632 + PGA1_c04550 0.87 -0.2
448,640 - PGA1_c04550 0.87 -0.4
448,804 + +0.7
448,813 + -0.8
448,816 - +0.2
448,916 - -1.2
449,029 - +0.6
449,077 - PGA1_c04560 0.11 -0.5
449,077 - PGA1_c04560 0.11 -0.2
449,084 + PGA1_c04560 0.12 +0.1
449,087 - PGA1_c04560 0.12 -0.4
449,124 - PGA1_c04560 0.15 +1.0
449,129 - PGA1_c04560 0.15 +0.4
449,165 - PGA1_c04560 0.18 -0.4
449,199 - PGA1_c04560 0.20 -1.5
449,200 - PGA1_c04560 0.21 -0.2
449,200 - PGA1_c04560 0.21 +1.0
449,337 - PGA1_c04560 0.31 +0.8
449,358 - PGA1_c04560 0.32 +0.2
449,363 - PGA1_c04560 0.33 +1.6
449,370 - PGA1_c04560 0.33 +0.7
449,397 + PGA1_c04560 0.35 +1.0
449,410 - PGA1_c04560 0.36 +0.1
449,456 + PGA1_c04560 0.39 +0.1
449,463 - PGA1_c04560 0.40 -1.0
449,464 - PGA1_c04560 0.40 +1.4
449,495 + PGA1_c04560 0.42 -0.9
449,495 + PGA1_c04560 0.42 +0.8
449,495 + PGA1_c04560 0.42 +0.5
449,495 + PGA1_c04560 0.42 -0.7
449,495 + PGA1_c04560 0.42 +0.0
449,495 + PGA1_c04560 0.42 +0.7
449,495 + PGA1_c04560 0.42 -1.2
449,503 - PGA1_c04560 0.43 -0.3
449,503 - PGA1_c04560 0.43 +0.6
449,503 - PGA1_c04560 0.43 -0.9
449,530 + PGA1_c04560 0.45 -0.0
449,530 + PGA1_c04560 0.45 -0.4
449,535 + PGA1_c04560 0.45 +0.0
449,542 - PGA1_c04560 0.46 -1.5
449,543 - PGA1_c04560 0.46 -0.9
449,544 + PGA1_c04560 0.46 -0.0
449,548 - PGA1_c04560 0.46 -0.5
449,648 + PGA1_c04560 0.54 -0.2
449,706 + PGA1_c04560 0.58 -0.5
449,714 - PGA1_c04560 0.59 +0.7
449,751 - PGA1_c04560 0.61 -0.1

Or see this region's nucleotide sequence