Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g34 and HP15_p42g35 are separated by 6 nucleotides HP15_p42g35 and HP15_p42g36 are separated by 4 nucleotides HP15_p42g36 and HP15_p42g37 are separated by 168 nucleotides HP15_p42g37 and HP15_p42g38 are separated by 18 nucleotides HP15_p42g38 and HP15_p42g39 are separated by 13 nucleotides
HP15_p42g34: HP15_p42g34 - DNA-binding protein, at 27,748 to 28,131
_p42g34
HP15_p42g35: HP15_p42g35 - membrane protein, at 28,138 to 28,644
_p42g35
HP15_p42g36: HP15_p42g36 - hypothetical protein, at 28,649 to 28,759
_p42g36
HP15_p42g37: HP15_p42g37 - conserved hypothetical protein, at 28,928 to 29,197
_p42g37
HP15_p42g38: HP15_p42g38 - conserved hypothetical protein, secreted, at 29,216 to 29,641
_p42g38
HP15_p42g39: HP15_p42g39 - TrbP protein, at 29,655 to 30,383
_p42g39
Position (kb) 28
29
30 Strain fitness (log2 ratio) -1
0
1 at 27.962 kb on + strand, within HP15_p42g34 at 27.962 kb on + strand, within HP15_p42g34 at 27.967 kb on + strand, within HP15_p42g34 at 27.970 kb on - strand, within HP15_p42g34 at 27.970 kb on - strand, within HP15_p42g34 at 28.005 kb on - strand, within HP15_p42g34 at 28.012 kb on + strand, within HP15_p42g34 at 28.012 kb on + strand, within HP15_p42g34 at 28.019 kb on + strand, within HP15_p42g34 at 28.019 kb on + strand, within HP15_p42g34 at 28.019 kb on + strand, within HP15_p42g34 at 28.025 kb on + strand, within HP15_p42g34 at 28.027 kb on - strand, within HP15_p42g34 at 28.027 kb on - strand, within HP15_p42g34 at 28.062 kb on - strand, within HP15_p42g34 at 28.138 kb on - strand at 28.179 kb on + strand at 28.250 kb on - strand, within HP15_p42g35 at 28.281 kb on + strand, within HP15_p42g35 at 28.289 kb on - strand, within HP15_p42g35 at 28.359 kb on - strand, within HP15_p42g35 at 28.361 kb on + strand, within HP15_p42g35 at 28.369 kb on - strand, within HP15_p42g35 at 28.369 kb on - strand, within HP15_p42g35 at 28.369 kb on - strand, within HP15_p42g35 at 28.414 kb on + strand, within HP15_p42g35 at 28.415 kb on + strand, within HP15_p42g35 at 28.415 kb on + strand, within HP15_p42g35 at 28.423 kb on - strand, within HP15_p42g35 at 28.423 kb on - strand, within HP15_p42g35 at 28.423 kb on - strand, within HP15_p42g35 at 28.428 kb on + strand, within HP15_p42g35 at 28.428 kb on + strand, within HP15_p42g35 at 28.431 kb on - strand, within HP15_p42g35 at 28.433 kb on + strand, within HP15_p42g35 at 28.436 kb on - strand, within HP15_p42g35 at 28.442 kb on - strand, within HP15_p42g35 at 28.443 kb on - strand, within HP15_p42g35 at 28.626 kb on + strand at 28.653 kb on - strand at 28.699 kb on - strand, within HP15_p42g36 at 28.791 kb on - strand at 28.791 kb on - strand at 28.798 kb on + strand at 28.798 kb on + strand at 28.798 kb on - strand at 28.806 kb on - strand at 28.882 kb on + strand at 28.898 kb on + strand at 28.966 kb on - strand, within HP15_p42g37 at 28.972 kb on + strand, within HP15_p42g37 at 29.061 kb on + strand, within HP15_p42g37 at 29.061 kb on + strand, within HP15_p42g37 at 29.069 kb on - strand, within HP15_p42g37 at 29.071 kb on + strand, within HP15_p42g37 at 29.071 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.076 kb on + strand, within HP15_p42g37 at 29.079 kb on - strand, within HP15_p42g37 at 29.084 kb on - strand, within HP15_p42g37 at 29.084 kb on - strand, within HP15_p42g37 at 29.084 kb on - strand, within HP15_p42g37 at 29.084 kb on - strand, within HP15_p42g37 at 29.084 kb on - strand, within HP15_p42g37 at 29.084 kb on - strand, within HP15_p42g37 at 29.084 kb on - strand, within HP15_p42g37 at 29.084 kb on - strand, within HP15_p42g37 at 29.084 kb on - strand, within HP15_p42g37 at 29.084 kb on - strand, within HP15_p42g37 at 29.084 kb on - strand, within HP15_p42g37 at 29.084 kb on - strand, within HP15_p42g37 at 29.084 kb on - strand, within HP15_p42g37 at 29.136 kb on + strand, within HP15_p42g37 at 29.201 kb on - strand at 29.222 kb on - strand at 29.257 kb on + strand at 29.257 kb on + strand at 29.257 kb on + strand at 29.257 kb on + strand at 29.257 kb on + strand at 29.265 kb on - strand, within HP15_p42g38 at 29.265 kb on - strand, within HP15_p42g38 at 29.265 kb on - strand, within HP15_p42g38 at 29.265 kb on - strand, within HP15_p42g38 at 29.265 kb on - strand, within HP15_p42g38 at 29.265 kb on - strand, within HP15_p42g38 at 29.265 kb on - strand, within HP15_p42g38 at 29.265 kb on - strand, within HP15_p42g38 at 29.265 kb on - strand, within HP15_p42g38 at 29.265 kb on - strand, within HP15_p42g38 at 29.265 kb on - strand, within HP15_p42g38 at 29.387 kb on - strand, within HP15_p42g38 at 29.393 kb on - strand, within HP15_p42g38 at 29.404 kb on - strand, within HP15_p42g38 at 29.423 kb on - strand, within HP15_p42g38 at 29.457 kb on - strand, within HP15_p42g38 at 29.524 kb on - strand, within HP15_p42g38 at 29.584 kb on - strand, within HP15_p42g38 at 29.584 kb on - strand, within HP15_p42g38 at 29.604 kb on - strand at 29.612 kb on + strand at 29.612 kb on + strand at 29.612 kb on + strand at 29.612 kb on + strand at 29.620 kb on - strand at 29.620 kb on - strand at 29.620 kb on - strand at 29.620 kb on - strand at 29.620 kb on - strand at 29.679 kb on + strand at 29.722 kb on - strand at 29.795 kb on - strand, within HP15_p42g39 at 29.845 kb on - strand, within HP15_p42g39 at 29.847 kb on + strand, within HP15_p42g39 at 29.847 kb on + strand, within HP15_p42g39 at 29.855 kb on + strand, within HP15_p42g39 at 29.855 kb on - strand, within HP15_p42g39 at 29.877 kb on + strand, within HP15_p42g39 at 29.882 kb on + strand, within HP15_p42g39 at 29.907 kb on - strand, within HP15_p42g39 at 29.911 kb on + strand, within HP15_p42g39 at 29.964 kb on + strand, within HP15_p42g39 at 29.966 kb on - strand, within HP15_p42g39 at 29.972 kb on - strand, within HP15_p42g39 at 29.972 kb on - strand, within HP15_p42g39 at 29.991 kb on - strand, within HP15_p42g39 at 30.002 kb on + strand, within HP15_p42g39 at 30.080 kb on - strand, within HP15_p42g39 at 30.085 kb on - strand, within HP15_p42g39 at 30.085 kb on - strand, within HP15_p42g39 at 30.171 kb on - strand, within HP15_p42g39 at 30.176 kb on - strand, within HP15_p42g39 at 30.176 kb on - strand, within HP15_p42g39 at 30.188 kb on - strand, within HP15_p42g39
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 27,962 + HP15_p42g34 0.56 -0.3 27,962 + HP15_p42g34 0.56 -0.3 27,967 + HP15_p42g34 0.57 +0.3 27,970 - HP15_p42g34 0.58 -1.4 27,970 - HP15_p42g34 0.58 +0.6 28,005 - HP15_p42g34 0.67 +0.8 28,012 + HP15_p42g34 0.69 -0.3 28,012 + HP15_p42g34 0.69 +0.1 28,019 + HP15_p42g34 0.71 -0.1 28,019 + HP15_p42g34 0.71 +1.4 28,019 + HP15_p42g34 0.71 -0.7 28,025 + HP15_p42g34 0.72 +0.1 28,027 - HP15_p42g34 0.73 +0.7 28,027 - HP15_p42g34 0.73 -0.4 28,062 - HP15_p42g34 0.82 +0.5 28,138 - -1.2 28,179 + +0.9 28,250 - HP15_p42g35 0.22 -0.6 28,281 + HP15_p42g35 0.28 +0.2 28,289 - HP15_p42g35 0.30 -0.5 28,359 - HP15_p42g35 0.44 -0.2 28,361 + HP15_p42g35 0.44 +1.6 28,369 - HP15_p42g35 0.46 +0.6 28,369 - HP15_p42g35 0.46 +0.3 28,369 - HP15_p42g35 0.46 -0.1 28,414 + HP15_p42g35 0.54 +0.7 28,415 + HP15_p42g35 0.55 +0.1 28,415 + HP15_p42g35 0.55 +0.3 28,423 - HP15_p42g35 0.56 -0.1 28,423 - HP15_p42g35 0.56 -0.2 28,423 - HP15_p42g35 0.56 -0.8 28,428 + HP15_p42g35 0.57 -0.2 28,428 + HP15_p42g35 0.57 -0.1 28,431 - HP15_p42g35 0.58 +0.7 28,433 + HP15_p42g35 0.58 -0.1 28,436 - HP15_p42g35 0.59 -0.0 28,442 - HP15_p42g35 0.60 +0.9 28,443 - HP15_p42g35 0.60 +0.4 28,626 + +0.0 28,653 - -0.2 28,699 - HP15_p42g36 0.45 +0.3 28,791 - +0.4 28,791 - -0.1 28,798 + +0.4 28,798 + -0.2 28,798 - -0.3 28,806 - -0.2 28,882 + +0.0 28,898 + +0.9 28,966 - HP15_p42g37 0.14 +0.6 28,972 + HP15_p42g37 0.16 -0.4 29,061 + HP15_p42g37 0.49 +0.4 29,061 + HP15_p42g37 0.49 +0.4 29,069 - HP15_p42g37 0.52 +0.8 29,071 + HP15_p42g37 0.53 +0.9 29,071 + HP15_p42g37 0.53 +0.4 29,076 + HP15_p42g37 0.55 -0.6 29,076 + HP15_p42g37 0.55 -0.6 29,076 + HP15_p42g37 0.55 -0.2 29,076 + HP15_p42g37 0.55 +0.2 29,076 + HP15_p42g37 0.55 +0.3 29,076 + HP15_p42g37 0.55 -0.2 29,076 + HP15_p42g37 0.55 +0.3 29,076 + HP15_p42g37 0.55 +0.2 29,076 + HP15_p42g37 0.55 +0.4 29,076 + HP15_p42g37 0.55 +0.4 29,076 + HP15_p42g37 0.55 +0.7 29,076 + HP15_p42g37 0.55 +0.0 29,076 + HP15_p42g37 0.55 +0.4 29,076 + HP15_p42g37 0.55 +0.4 29,076 + HP15_p42g37 0.55 -0.8 29,076 + HP15_p42g37 0.55 +0.5 29,076 + HP15_p42g37 0.55 -0.3 29,076 + HP15_p42g37 0.55 -0.5 29,079 - HP15_p42g37 0.56 +0.5 29,084 - HP15_p42g37 0.58 -0.4 29,084 - HP15_p42g37 0.58 +0.3 29,084 - HP15_p42g37 0.58 +0.6 29,084 - HP15_p42g37 0.58 +0.5 29,084 - HP15_p42g37 0.58 +0.4 29,084 - HP15_p42g37 0.58 +0.2 29,084 - HP15_p42g37 0.58 +0.7 29,084 - HP15_p42g37 0.58 +0.6 29,084 - HP15_p42g37 0.58 +0.6 29,084 - HP15_p42g37 0.58 +0.8 29,084 - HP15_p42g37 0.58 +0.6 29,084 - HP15_p42g37 0.58 +0.1 29,084 - HP15_p42g37 0.58 +0.3 29,136 + HP15_p42g37 0.77 +0.1 29,201 - +0.5 29,222 - +0.1 29,257 + -0.2 29,257 + +0.3 29,257 + -0.4 29,257 + +0.2 29,257 + -0.2 29,265 - HP15_p42g38 0.12 +1.3 29,265 - HP15_p42g38 0.12 -0.0 29,265 - HP15_p42g38 0.12 +0.2 29,265 - HP15_p42g38 0.12 +0.5 29,265 - HP15_p42g38 0.12 -0.5 29,265 - HP15_p42g38 0.12 -0.4 29,265 - HP15_p42g38 0.12 -0.2 29,265 - HP15_p42g38 0.12 +0.3 29,265 - HP15_p42g38 0.12 -0.1 29,265 - HP15_p42g38 0.12 +0.4 29,265 - HP15_p42g38 0.12 +0.4 29,387 - HP15_p42g38 0.40 +0.7 29,393 - HP15_p42g38 0.42 -0.5 29,404 - HP15_p42g38 0.44 +0.3 29,423 - HP15_p42g38 0.49 +0.3 29,457 - HP15_p42g38 0.57 +0.5 29,524 - HP15_p42g38 0.72 +0.7 29,584 - HP15_p42g38 0.86 +0.9 29,584 - HP15_p42g38 0.86 +0.4 29,604 - +1.0 29,612 + +1.0 29,612 + +0.2 29,612 + -0.4 29,612 + -0.2 29,620 - +0.0 29,620 - +0.5 29,620 - +0.0 29,620 - +0.1 29,620 - -0.2 29,679 + -0.1 29,722 - +0.7 29,795 - HP15_p42g39 0.19 +0.6 29,845 - HP15_p42g39 0.26 +0.2 29,847 + HP15_p42g39 0.26 +1.2 29,847 + HP15_p42g39 0.26 +0.2 29,855 + HP15_p42g39 0.27 +0.2 29,855 - HP15_p42g39 0.27 -0.0 29,877 + HP15_p42g39 0.30 +1.4 29,882 + HP15_p42g39 0.31 +0.9 29,907 - HP15_p42g39 0.35 +0.4 29,911 + HP15_p42g39 0.35 -0.1 29,964 + HP15_p42g39 0.42 +0.8 29,966 - HP15_p42g39 0.43 +0.7 29,972 - HP15_p42g39 0.43 +1.0 29,972 - HP15_p42g39 0.43 +0.4 29,991 - HP15_p42g39 0.46 +0.7 30,002 + HP15_p42g39 0.48 -0.6 30,080 - HP15_p42g39 0.58 -0.3 30,085 - HP15_p42g39 0.59 +0.4 30,085 - HP15_p42g39 0.59 -0.0 30,171 - HP15_p42g39 0.71 +0.2 30,176 - HP15_p42g39 0.71 +0.1 30,176 - HP15_p42g39 0.71 +1.0 30,188 - HP15_p42g39 0.73 +1.0
Or see this region's nucleotide sequence