Experiment: Glucose defined media 26C sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3696 and Psest_3697 overlap by 4 nucleotides Psest_3697 and Psest_3698 overlap by 11 nucleotides Psest_3698 and Psest_3699 overlap by 14 nucleotides
Psest_3696: Psest_3696 - Predicted thioesterase, at 3,860,261 to 3,860,686
_3696
Psest_3697: Psest_3697 - Outer membrane lipoprotein carrier protein LolA., at 3,860,683 to 3,861,294
_3697
Psest_3698: Psest_3698 - Predicted exporter, at 3,861,284 to 3,863,632
_3698
Psest_3699: Psest_3699 - Dehydrogenases (flavoproteins), at 3,863,619 to 3,864,869
_3699
Position (kb)
3861
3862
3863
3864 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3860.352 kb on - strand, within Psest_3696 at 3860.352 kb on - strand, within Psest_3696 at 3860.360 kb on + strand, within Psest_3696 at 3860.360 kb on + strand, within Psest_3696 at 3860.360 kb on + strand, within Psest_3696 at 3860.360 kb on + strand, within Psest_3696 at 3860.361 kb on - strand, within Psest_3696 at 3860.361 kb on - strand, within Psest_3696 at 3860.361 kb on - strand, within Psest_3696 at 3860.408 kb on + strand, within Psest_3696 at 3860.408 kb on + strand, within Psest_3696 at 3860.408 kb on + strand, within Psest_3696 at 3860.408 kb on + strand, within Psest_3696 at 3860.408 kb on + strand, within Psest_3696 at 3860.409 kb on - strand, within Psest_3696 at 3860.409 kb on - strand, within Psest_3696 at 3860.409 kb on - strand, within Psest_3696 at 3860.409 kb on - strand, within Psest_3696 at 3860.454 kb on + strand, within Psest_3696 at 3860.454 kb on + strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.465 kb on + strand, within Psest_3696 at 3860.465 kb on + strand, within Psest_3696 at 3860.465 kb on + strand, within Psest_3696 at 3860.466 kb on - strand, within Psest_3696 at 3860.466 kb on - strand, within Psest_3696 at 3860.466 kb on - strand, within Psest_3696 at 3860.466 kb on - strand, within Psest_3696 at 3860.503 kb on - strand, within Psest_3696 at 3860.546 kb on + strand, within Psest_3696 at 3860.547 kb on - strand, within Psest_3696 at 3860.547 kb on - strand, within Psest_3696 at 3860.547 kb on - strand, within Psest_3696 at 3860.547 kb on - strand, within Psest_3696 at 3860.547 kb on - strand, within Psest_3696 at 3860.805 kb on - strand, within Psest_3697 at 3861.198 kb on - strand, within Psest_3697 at 3861.198 kb on - strand, within Psest_3697 at 3862.197 kb on + strand, within Psest_3698 at 3862.197 kb on + strand, within Psest_3698 at 3862.197 kb on + strand, within Psest_3698 at 3862.197 kb on + strand, within Psest_3698 at 3862.197 kb on + strand, within Psest_3698 at 3862.256 kb on + strand, within Psest_3698 at 3862.257 kb on - strand, within Psest_3698 at 3862.257 kb on - strand, within Psest_3698 at 3862.605 kb on + strand, within Psest_3698 at 3862.659 kb on + strand, within Psest_3698 at 3862.718 kb on + strand, within Psest_3698 at 3862.718 kb on + strand, within Psest_3698 at 3862.820 kb on + strand, within Psest_3698 at 3863.393 kb on + strand, within Psest_3698 at 3863.928 kb on + strand, within Psest_3699 at 3863.928 kb on + strand, within Psest_3699 at 3863.928 kb on + strand, within Psest_3699 at 3863.929 kb on - strand, within Psest_3699 at 3863.929 kb on - strand, within Psest_3699 at 3863.929 kb on - strand, within Psest_3699 at 3864.001 kb on - strand, within Psest_3699
Per-strain Table
Position Strand Gene LocusTag Fraction Glucose defined media 26C sample1 remove 3,860,352 - Psest_3696 0.21 +2.6 3,860,352 - Psest_3696 0.21 -0.6 3,860,360 + Psest_3696 0.23 +1.0 3,860,360 + Psest_3696 0.23 -0.7 3,860,360 + Psest_3696 0.23 +2.0 3,860,360 + Psest_3696 0.23 +0.4 3,860,361 - Psest_3696 0.23 +1.3 3,860,361 - Psest_3696 0.23 -0.2 3,860,361 - Psest_3696 0.23 +0.4 3,860,408 + Psest_3696 0.35 +1.0 3,860,408 + Psest_3696 0.35 +1.0 3,860,408 + Psest_3696 0.35 -1.0 3,860,408 + Psest_3696 0.35 -0.3 3,860,408 + Psest_3696 0.35 +1.0 3,860,409 - Psest_3696 0.35 -1.3 3,860,409 - Psest_3696 0.35 +0.0 3,860,409 - Psest_3696 0.35 +2.0 3,860,409 - Psest_3696 0.35 +0.0 3,860,454 + Psest_3696 0.45 +0.5 3,860,454 + Psest_3696 0.45 +1.3 3,860,455 - Psest_3696 0.46 -1.1 3,860,455 - Psest_3696 0.46 +0.1 3,860,455 - Psest_3696 0.46 -0.6 3,860,455 - Psest_3696 0.46 -0.3 3,860,455 - Psest_3696 0.46 -1.0 3,860,455 - Psest_3696 0.46 +1.3 3,860,465 + Psest_3696 0.48 +2.6 3,860,465 + Psest_3696 0.48 +1.5 3,860,465 + Psest_3696 0.48 +2.6 3,860,466 - Psest_3696 0.48 -1.0 3,860,466 - Psest_3696 0.48 +0.0 3,860,466 - Psest_3696 0.48 +1.3 3,860,466 - Psest_3696 0.48 +2.0 3,860,503 - Psest_3696 0.57 +0.0 3,860,546 + Psest_3696 0.67 +1.8 3,860,547 - Psest_3696 0.67 +1.0 3,860,547 - Psest_3696 0.67 -0.2 3,860,547 - Psest_3696 0.67 +0.4 3,860,547 - Psest_3696 0.67 -0.6 3,860,547 - Psest_3696 0.67 -1.0 3,860,805 - Psest_3697 0.20 -1.0 3,861,198 - Psest_3697 0.84 +0.4 3,861,198 - Psest_3697 0.84 -0.2 3,862,197 + Psest_3698 0.39 +0.0 3,862,197 + Psest_3698 0.39 +2.0 3,862,197 + Psest_3698 0.39 -1.8 3,862,197 + Psest_3698 0.39 -1.0 3,862,197 + Psest_3698 0.39 -0.4 3,862,256 + Psest_3698 0.41 +1.0 3,862,257 - Psest_3698 0.41 +1.0 3,862,257 - Psest_3698 0.41 +0.0 3,862,605 + Psest_3698 0.56 -1.0 3,862,659 + Psest_3698 0.59 -0.3 3,862,718 + Psest_3698 0.61 +1.0 3,862,718 + Psest_3698 0.61 -0.3 3,862,820 + Psest_3698 0.65 +0.0 3,863,393 + Psest_3698 0.90 -0.7 3,863,928 + Psest_3699 0.25 +2.2 3,863,928 + Psest_3699 0.25 +1.8 3,863,928 + Psest_3699 0.25 +0.0 3,863,929 - Psest_3699 0.25 +0.2 3,863,929 - Psest_3699 0.25 +0.7 3,863,929 - Psest_3699 0.25 +1.0 3,864,001 - Psest_3699 0.31 -0.4
Or see this region's nucleotide sequence