Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c36290

Experiment: L-Malic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C)
3,794,468	+				+0.7
3,794,476	-				+0.4
3,794,476	-				+0.1
3,794,476	-				+0.5
3,794,491	+				+0.8
3,794,518	+		PGA1_c36280	0.12	-0.4
3,794,526	-		PGA1_c36280	0.12	+0.1
3,794,548	-		PGA1_c36280	0.15	+0.2
3,794,555	-		PGA1_c36280	0.16	+0.9
3,794,560	-		PGA1_c36280	0.16	+0.1
3,794,616	+		PGA1_c36280	0.23	+0.6
3,794,616	+		PGA1_c36280	0.23	-0.4
3,794,616	+		PGA1_c36280	0.23	-1.7
3,794,616	+		PGA1_c36280	0.23	+0.0
3,794,620	-		PGA1_c36280	0.24	+2.1
3,794,624	-		PGA1_c36280	0.24	+1.0
3,794,631	+		PGA1_c36280	0.25	+0.8
3,794,639	-		PGA1_c36280	0.26	-0.6
3,794,639	-		PGA1_c36280	0.26	+0.5
3,794,641	+		PGA1_c36280	0.26	-0.5
3,794,641	+		PGA1_c36280	0.26	+0.3
3,794,649	-		PGA1_c36280	0.27	-0.2
3,794,649	-		PGA1_c36280	0.27	+0.7
3,794,665	-		PGA1_c36280	0.29	-0.3
3,794,670	+		PGA1_c36280	0.29	-0.9
3,794,692	+		PGA1_c36280	0.32	-0.8
3,794,692	+		PGA1_c36280	0.32	-0.4
3,794,692	+		PGA1_c36280	0.32	+0.1
3,794,694	-		PGA1_c36280	0.32	-1.2
3,794,704	-		PGA1_c36280	0.33	+1.0
3,794,754	+		PGA1_c36280	0.39	-0.8
3,794,761	+		PGA1_c36280	0.40	+0.7
3,794,769	-		PGA1_c36280	0.41	+0.6
3,794,769	-		PGA1_c36280	0.41	+0.6
3,794,769	-		PGA1_c36280	0.41	+0.9
3,794,789	-		PGA1_c36280	0.43	-0.2
3,794,789	-		PGA1_c36280	0.43	+1.0
3,794,797	-		PGA1_c36280	0.44	+0.2
3,794,808	+		PGA1_c36280	0.46	+0.9
3,794,817	-		PGA1_c36280	0.47	-0.0
3,794,845	+		PGA1_c36280	0.50	+1.0
3,794,845	+		PGA1_c36280	0.50	+0.4
3,794,852	-		PGA1_c36280	0.51	-2.2
3,794,864	+		PGA1_c36280	0.52	-0.0
3,794,864	+		PGA1_c36280	0.52	+1.1
3,794,864	+		PGA1_c36280	0.52	+0.6
3,794,872	-		PGA1_c36280	0.53	-0.9
3,794,872	-		PGA1_c36280	0.53	-2.4
3,794,900	+		PGA1_c36280	0.57	+0.9
3,794,931	+		PGA1_c36280	0.60	+0.4
3,794,939	-		PGA1_c36280	0.61	+0.4
3,794,986	+		PGA1_c36280	0.67	+0.7
3,794,988	+		PGA1_c36280	0.67	-0.2
3,794,988	+		PGA1_c36280	0.67	+0.0
3,794,988	+		PGA1_c36280	0.67	+0.5
3,794,988	+		PGA1_c36280	0.67	-2.8
3,794,988	+		PGA1_c36280	0.67	-0.2
3,794,988	+		PGA1_c36280	0.67	+0.2
3,794,996	-		PGA1_c36280	0.68	-0.0
3,794,996	-		PGA1_c36280	0.68	+0.8
3,794,996	-		PGA1_c36280	0.68	+0.4
3,794,996	-		PGA1_c36280	0.68	+1.0
3,794,996	-		PGA1_c36280	0.68	-0.1
3,794,996	-		PGA1_c36280	0.68	+0.4
3,795,000	+		PGA1_c36280	0.68	+1.0
3,795,000	+		PGA1_c36280	0.68	+0.3
3,795,000	+		PGA1_c36280	0.68	-0.5
3,795,008	-		PGA1_c36280	0.69	+0.9
3,795,009	-		PGA1_c36280	0.69	+0.7
3,795,013	+		PGA1_c36280	0.70	-0.4
3,795,034	-		PGA1_c36280	0.72	+1.4
3,795,036	+		PGA1_c36280	0.73	-0.6
3,795,036	+		PGA1_c36280	0.73	-1.9
3,795,044	-		PGA1_c36280	0.73	-0.1
3,795,044	-		PGA1_c36280	0.73	-1.6
3,795,064	-		PGA1_c36280	0.76	+1.1
3,795,079	+		PGA1_c36280	0.78	-1.1
3,795,221	-				+0.1
3,795,221	-				+0.2
3,795,222	+				-0.0
3,795,273	+				+0.3
3,795,304	+				+0.1
3,795,318	+				+0.4
3,795,335	-				+0.3
3,795,338	+				+0.2
3,795,339	+				-0.9
3,795,341	-				-1.2
3,795,341	-				+1.6
3,795,357	+				-2.8
3,795,371	-				+0.3
3,795,374	+				+0.1
3,795,389	+				-0.7
3,795,389	+				+1.5
3,795,389	+				-0.3
3,795,393	-				-0.7
3,795,397	-				+0.9
3,795,397	-				+0.2
3,795,397	-				+0.0
3,795,400	+				+0.9
3,795,400	+				-0.0
3,795,408	-				-1.4
3,795,408	-				-0.1
3,795,455	+				-0.1
3,795,463	+				-0.7
3,795,476	-				+1.2
3,795,478	+				-3.1
3,795,486	-				-0.1
3,795,621	+		PGA1_c36290	0.17	+0.3
3,795,639	+		PGA1_c36290	0.19	-0.9
3,795,647	-		PGA1_c36290	0.20	+0.7
3,795,656	+		PGA1_c36290	0.21	+0.0
3,795,733	+		PGA1_c36290	0.29	-0.7
3,795,775	+		PGA1_c36290	0.33	+0.4
3,795,783	-		PGA1_c36290	0.34	-0.8
3,795,789	-		PGA1_c36290	0.35	-0.2
3,795,823	-		PGA1_c36290	0.38	+0.4
3,795,838	+		PGA1_c36290	0.40	-0.5
3,795,846	+		PGA1_c36290	0.41	+0.5
3,795,854	-		PGA1_c36290	0.42	-0.5
3,795,867	-		PGA1_c36290	0.43	-0.6
3,795,875	+		PGA1_c36290	0.44	-0.4
3,795,877	-		PGA1_c36290	0.44	-0.4
3,795,882	-		PGA1_c36290	0.45	-0.4
3,795,890	-		PGA1_c36290	0.45	-1.4
3,795,903	+		PGA1_c36290	0.47	-0.4
3,795,989	-		PGA1_c36290	0.56	-0.9
3,796,030	+		PGA1_c36290	0.60	-0.8
3,796,166	-		PGA1_c36290	0.75	+0.3
3,796,166	-		PGA1_c36290	0.75	+0.2
3,796,174	+		PGA1_c36290	0.75	-1.2
3,796,174	+		PGA1_c36290	0.75	-0.3
3,796,182	-		PGA1_c36290	0.76	-1.1
3,796,182	-		PGA1_c36290	0.76	+0.5
3,796,219	+		PGA1_c36290	0.80	-0.3
3,796,227	-		PGA1_c36290	0.81	+0.2
3,796,237	-		PGA1_c36290	0.82	+0.5
3,796,237	-		PGA1_c36290	0.82	-0.4
3,796,237	-		PGA1_c36290	0.82	-0.1
3,796,272	-		PGA1_c36290	0.86	+0.3
3,796,281	-		PGA1_c36290	0.87	-1.6
3,796,293	-		PGA1_c36290	0.88	-0.0
3,796,295	+		PGA1_c36290	0.88	-0.4
3,796,300	+		PGA1_c36290	0.89	-0.1
3,796,303	-		PGA1_c36290	0.89	+0.7
3,796,308	-		PGA1_c36290	0.90	-0.1
3,796,308	-		PGA1_c36290	0.90	-0.5
3,796,308	-		PGA1_c36290	0.90	-0.5
3,796,312	+				+0.1
3,796,320	-				-0.4
3,796,343	+				-2.5
3,796,348	+				-0.3
3,796,356	-				+2.0
3,796,356	-				-0.5
3,796,390	+				+0.1
3,796,398	-				+0.5
3,796,398	-				-1.9
3,796,398	-				+0.1
3,796,401	+				-0.7
3,796,414	-				-0.5
3,796,541	-		PGA1_c36300	0.14	-0.9
3,796,578	+		PGA1_c36300	0.20	+1.3
3,796,579	+		PGA1_c36300	0.21	-1.3
3,796,586	-		PGA1_c36300	0.22	+0.0
3,796,627	+		PGA1_c36300	0.29	+1.5
3,796,627	+		PGA1_c36300	0.29	-0.1
3,796,630	-		PGA1_c36300	0.29	+0.7
3,796,664	+		PGA1_c36300	0.35	-1.3
3,796,664	+		PGA1_c36300	0.35	-0.9
3,796,664	+		PGA1_c36300	0.35	-0.5
3,796,665	+		PGA1_c36300	0.35	-0.5
3,796,665	+		PGA1_c36300	0.35	-1.1
3,796,672	-		PGA1_c36300	0.36	+0.3
3,796,673	-		PGA1_c36300	0.36	-0.4
3,796,673	-		PGA1_c36300	0.36	+0.1
3,796,736	+		PGA1_c36300	0.47	-1.3
3,796,794	+		PGA1_c36300	0.56	-0.4
3,796,807	+		PGA1_c36300	0.58	-0.5
3,796,807	+		PGA1_c36300	0.58	-0.2
3,796,856	+		PGA1_c36300	0.66	-0.3
3,796,864	-		PGA1_c36300	0.68	-0.8
3,796,866	+		PGA1_c36300	0.68	-0.0
3,796,866	+		PGA1_c36300	0.68	+0.9
3,796,874	-		PGA1_c36300	0.69	-0.7
3,796,945	+		PGA1_c36300	0.81	-0.6
3,796,953	-		PGA1_c36300	0.82	-1.1
3,797,022	+				-0.3
3,797,039	+				+0.9
3,797,086	+				+1.0