Strain Fitness in Marinobacter adhaerens HP15 around HP15_3292

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3291 and HP15_3292 are separated by 153 nucleotidesHP15_3292 and HP15_3293 are separated by 36 nucleotidesHP15_3293 and HP15_3294 are separated by 91 nucleotides HP15_3291: HP15_3291 - indole-3-glycerol phosphate synthase, at 3,449,387 to 3,450,208 _3291 HP15_3292: HP15_3292 - conserved hypothetical protein, at 3,450,362 to 3,450,973 _3292 HP15_3293: HP15_3293 - glutathione S-transferase, N-terminal domain protein, at 3,451,010 to 3,451,627 _3293 HP15_3294: HP15_3294 - hydrolase, alpha/beta fold family protein, at 3,451,719 to 3,452,453 _3294 Position (kb) 3450 3451Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3449.387 kb on - strandat 3450.000 kb on + strand, within HP15_3291at 3450.024 kb on + strand, within HP15_3291at 3450.024 kb on - strand, within HP15_3291at 3450.032 kb on - strand, within HP15_3291at 3450.223 kb on - strandat 3450.267 kb on - strandat 3450.321 kb on + strandat 3450.321 kb on + strandat 3450.321 kb on - strandat 3450.379 kb on - strandat 3450.567 kb on + strand, within HP15_3292at 3450.621 kb on + strand, within HP15_3292at 3450.648 kb on - strand, within HP15_3292at 3450.704 kb on + strand, within HP15_3292at 3450.736 kb on + strand, within HP15_3292at 3450.814 kb on + strand, within HP15_3292at 3450.843 kb on + strand, within HP15_3292at 3450.861 kb on + strand, within HP15_3292at 3450.914 kb on - strandat 3450.990 kb on - strandat 3451.016 kb on - strandat 3451.016 kb on - strandat 3451.016 kb on - strandat 3451.021 kb on - strandat 3451.021 kb on - strandat 3451.026 kb on - strandat 3451.077 kb on - strand, within HP15_3293at 3451.089 kb on + strand, within HP15_3293at 3451.147 kb on + strand, within HP15_3293at 3451.157 kb on + strand, within HP15_3293at 3451.158 kb on + strand, within HP15_3293at 3451.165 kb on - strand, within HP15_3293at 3451.305 kb on + strand, within HP15_3293at 3451.383 kb on - strand, within HP15_3293at 3451.397 kb on - strand, within HP15_3293at 3451.507 kb on + strand, within HP15_3293at 3451.533 kb on - strand, within HP15_3293at 3451.659 kb on - strandat 3451.702 kb on + strandat 3451.837 kb on + strand, within HP15_3294at 3451.881 kb on + strand, within HP15_3294

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,449,387 - -4.6
3,450,000 + HP15_3291 0.75 -1.8
3,450,024 + HP15_3291 0.77 -2.4
3,450,024 - HP15_3291 0.77 -4.4
3,450,032 - HP15_3291 0.78 -3.5
3,450,223 - +0.1
3,450,267 - -0.1
3,450,321 + -0.0
3,450,321 + +0.1
3,450,321 - -0.1
3,450,379 - -0.1
3,450,567 + HP15_3292 0.33 +0.3
3,450,621 + HP15_3292 0.42 +0.6
3,450,648 - HP15_3292 0.47 +0.5
3,450,704 + HP15_3292 0.56 -0.2
3,450,736 + HP15_3292 0.61 -0.7
3,450,814 + HP15_3292 0.74 +0.2
3,450,843 + HP15_3292 0.79 +0.7
3,450,861 + HP15_3292 0.82 +0.4
3,450,914 - +0.4
3,450,990 - +0.9
3,451,016 - +0.9
3,451,016 - +0.1
3,451,016 - -0.5
3,451,021 - -0.1
3,451,021 - +0.1
3,451,026 - +0.9
3,451,077 - HP15_3293 0.11 -0.8
3,451,089 + HP15_3293 0.13 -0.0
3,451,147 + HP15_3293 0.22 +0.1
3,451,157 + HP15_3293 0.24 +0.4
3,451,158 + HP15_3293 0.24 +0.7
3,451,165 - HP15_3293 0.25 +0.0
3,451,305 + HP15_3293 0.48 +0.0
3,451,383 - HP15_3293 0.60 +0.6
3,451,397 - HP15_3293 0.63 +0.4
3,451,507 + HP15_3293 0.80 +0.5
3,451,533 - HP15_3293 0.85 +1.3
3,451,659 - -0.1
3,451,702 + -0.4
3,451,837 + HP15_3294 0.16 -0.1
3,451,881 + HP15_3294 0.22 -0.2

Or see this region's nucleotide sequence