Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03130

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03120 and PGA1_c03130 are separated by 178 nucleotidesPGA1_c03130 and PGA1_c03140 are separated by 35 nucleotides PGA1_c03120: PGA1_c03120 - hypothetical protein, at 300,891 to 301,745 _c03120 PGA1_c03130: PGA1_c03130 - Putative transcriptional regulator, at 301,924 to 302,481 _c03130 PGA1_c03140: PGA1_c03140 - putative tRNA threonylcarbamoyladenosine biosynthesis protein, at 302,517 to 303,464 _c03140 Position (kb) 301 302 303Strain fitness (log2 ratio) -3 -2 -1 0 1at 300.976 kb on + strandat 300.976 kb on + strandat 300.984 kb on - strand, within PGA1_c03120at 301.036 kb on + strand, within PGA1_c03120at 301.110 kb on - strand, within PGA1_c03120at 301.172 kb on - strand, within PGA1_c03120at 301.274 kb on + strand, within PGA1_c03120at 301.282 kb on + strand, within PGA1_c03120at 301.282 kb on - strand, within PGA1_c03120at 301.302 kb on - strand, within PGA1_c03120at 301.390 kb on - strand, within PGA1_c03120at 301.435 kb on + strand, within PGA1_c03120at 301.565 kb on + strand, within PGA1_c03120at 301.687 kb on + strandat 301.687 kb on + strandat 301.713 kb on + strandat 301.733 kb on + strandat 301.741 kb on - strandat 301.750 kb on + strandat 301.753 kb on - strandat 301.829 kb on + strandat 301.829 kb on + strandat 301.829 kb on + strandat 301.829 kb on + strandat 301.830 kb on + strandat 301.832 kb on - strandat 301.837 kb on - strandat 301.865 kb on + strandat 301.884 kb on + strandat 301.907 kb on + strandat 301.907 kb on + strandat 301.927 kb on + strandat 301.969 kb on - strandat 302.008 kb on + strand, within PGA1_c03130at 302.008 kb on + strand, within PGA1_c03130at 302.008 kb on + strand, within PGA1_c03130at 302.016 kb on - strand, within PGA1_c03130at 302.016 kb on - strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.105 kb on + strand, within PGA1_c03130at 302.113 kb on - strand, within PGA1_c03130at 302.113 kb on - strand, within PGA1_c03130at 302.113 kb on - strand, within PGA1_c03130at 302.113 kb on - strand, within PGA1_c03130at 302.113 kb on - strand, within PGA1_c03130at 302.113 kb on - strand, within PGA1_c03130at 302.113 kb on - strand, within PGA1_c03130at 302.113 kb on - strand, within PGA1_c03130at 302.113 kb on - strand, within PGA1_c03130at 302.113 kb on - strand, within PGA1_c03130at 302.119 kb on + strand, within PGA1_c03130at 302.153 kb on - strand, within PGA1_c03130at 302.157 kb on + strand, within PGA1_c03130at 302.165 kb on - strand, within PGA1_c03130at 302.170 kb on - strand, within PGA1_c03130at 302.170 kb on - strand, within PGA1_c03130at 302.201 kb on + strand, within PGA1_c03130at 302.223 kb on - strand, within PGA1_c03130at 302.233 kb on + strand, within PGA1_c03130at 302.276 kb on + strand, within PGA1_c03130at 302.276 kb on + strand, within PGA1_c03130at 302.276 kb on + strand, within PGA1_c03130at 302.276 kb on + strand, within PGA1_c03130at 302.276 kb on + strand, within PGA1_c03130at 302.276 kb on + strand, within PGA1_c03130at 302.276 kb on + strand, within PGA1_c03130at 302.276 kb on + strand, within PGA1_c03130at 302.276 kb on + strand, within PGA1_c03130at 302.276 kb on + strand, within PGA1_c03130at 302.276 kb on + strand, within PGA1_c03130at 302.284 kb on - strand, within PGA1_c03130at 302.284 kb on - strand, within PGA1_c03130at 302.284 kb on - strand, within PGA1_c03130at 302.284 kb on - strand, within PGA1_c03130at 302.284 kb on - strand, within PGA1_c03130at 302.284 kb on - strand, within PGA1_c03130at 302.284 kb on - strand, within PGA1_c03130at 302.284 kb on - strand, within PGA1_c03130at 302.284 kb on - strand, within PGA1_c03130at 302.284 kb on - strand, within PGA1_c03130at 302.284 kb on - strand, within PGA1_c03130at 302.286 kb on + strand, within PGA1_c03130at 302.286 kb on + strand, within PGA1_c03130at 302.286 kb on + strand, within PGA1_c03130at 302.286 kb on + strand, within PGA1_c03130at 302.294 kb on - strand, within PGA1_c03130at 302.294 kb on - strand, within PGA1_c03130at 302.301 kb on + strand, within PGA1_c03130at 302.301 kb on + strand, within PGA1_c03130at 302.312 kb on + strand, within PGA1_c03130at 302.375 kb on + strand, within PGA1_c03130at 302.375 kb on + strand, within PGA1_c03130at 302.438 kb on + strandat 302.454 kb on - strandat 302.463 kb on - strandat 302.465 kb on + strandat 302.470 kb on + strandat 302.503 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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300,976 + -1.5
300,976 + -2.0
300,984 - PGA1_c03120 0.11 -1.2
301,036 + PGA1_c03120 0.17 -1.3
301,110 - PGA1_c03120 0.26 -0.9
301,172 - PGA1_c03120 0.33 -2.5
301,274 + PGA1_c03120 0.45 -2.7
301,282 + PGA1_c03120 0.46 -3.6
301,282 - PGA1_c03120 0.46 -2.8
301,302 - PGA1_c03120 0.48 -2.4
301,390 - PGA1_c03120 0.58 -0.4
301,435 + PGA1_c03120 0.64 -2.5
301,565 + PGA1_c03120 0.79 -1.9
301,687 + -0.8
301,687 + -1.9
301,713 + -0.1
301,733 + -2.3
301,741 - -2.8
301,750 + -1.3
301,753 - -1.5
301,829 + -0.2
301,829 + -1.1
301,829 + +0.7
301,829 + -0.5
301,830 + -0.0
301,832 - -0.1
301,837 - +0.3
301,865 + -0.6
301,884 + +0.1
301,907 + -0.4
301,907 + -0.2
301,927 + +0.2
301,969 - -0.5
302,008 + PGA1_c03130 0.15 -0.2
302,008 + PGA1_c03130 0.15 -0.9
302,008 + PGA1_c03130 0.15 -0.2
302,016 - PGA1_c03130 0.16 -0.9
302,016 - PGA1_c03130 0.16 -0.4
302,105 + PGA1_c03130 0.32 -0.1
302,105 + PGA1_c03130 0.32 -1.1
302,105 + PGA1_c03130 0.32 -1.0
302,105 + PGA1_c03130 0.32 +0.1
302,105 + PGA1_c03130 0.32 +0.6
302,105 + PGA1_c03130 0.32 -0.4
302,105 + PGA1_c03130 0.32 -0.4
302,105 + PGA1_c03130 0.32 -0.5
302,105 + PGA1_c03130 0.32 -1.2
302,105 + PGA1_c03130 0.32 +0.9
302,105 + PGA1_c03130 0.32 +0.4
302,105 + PGA1_c03130 0.32 +0.7
302,105 + PGA1_c03130 0.32 -0.0
302,105 + PGA1_c03130 0.32 +0.6
302,105 + PGA1_c03130 0.32 -2.0
302,105 + PGA1_c03130 0.32 -0.0
302,105 + PGA1_c03130 0.32 -0.7
302,105 + PGA1_c03130 0.32 +0.1
302,105 + PGA1_c03130 0.32 -1.6
302,113 - PGA1_c03130 0.34 +0.1
302,113 - PGA1_c03130 0.34 +0.4
302,113 - PGA1_c03130 0.34 -0.5
302,113 - PGA1_c03130 0.34 -0.5
302,113 - PGA1_c03130 0.34 -0.6
302,113 - PGA1_c03130 0.34 -0.2
302,113 - PGA1_c03130 0.34 -1.0
302,113 - PGA1_c03130 0.34 +0.6
302,113 - PGA1_c03130 0.34 -0.5
302,113 - PGA1_c03130 0.34 -1.0
302,119 + PGA1_c03130 0.35 -1.0
302,153 - PGA1_c03130 0.41 -1.5
302,157 + PGA1_c03130 0.42 -0.5
302,165 - PGA1_c03130 0.43 +1.0
302,170 - PGA1_c03130 0.44 -1.5
302,170 - PGA1_c03130 0.44 +1.0
302,201 + PGA1_c03130 0.50 -0.1
302,223 - PGA1_c03130 0.54 -0.7
302,233 + PGA1_c03130 0.55 +1.4
302,276 + PGA1_c03130 0.63 -0.1
302,276 + PGA1_c03130 0.63 -0.0
302,276 + PGA1_c03130 0.63 -1.5
302,276 + PGA1_c03130 0.63 -0.8
302,276 + PGA1_c03130 0.63 +0.7
302,276 + PGA1_c03130 0.63 +0.9
302,276 + PGA1_c03130 0.63 +0.1
302,276 + PGA1_c03130 0.63 +0.5
302,276 + PGA1_c03130 0.63 +0.9
302,276 + PGA1_c03130 0.63 -0.1
302,276 + PGA1_c03130 0.63 -1.1
302,284 - PGA1_c03130 0.65 -0.3
302,284 - PGA1_c03130 0.65 +0.4
302,284 - PGA1_c03130 0.65 -0.5
302,284 - PGA1_c03130 0.65 -1.8
302,284 - PGA1_c03130 0.65 +0.6
302,284 - PGA1_c03130 0.65 -0.7
302,284 - PGA1_c03130 0.65 -0.4
302,284 - PGA1_c03130 0.65 +0.3
302,284 - PGA1_c03130 0.65 +0.3
302,284 - PGA1_c03130 0.65 +0.1
302,284 - PGA1_c03130 0.65 -0.1
302,286 + PGA1_c03130 0.65 -0.1
302,286 + PGA1_c03130 0.65 -0.8
302,286 + PGA1_c03130 0.65 -0.0
302,286 + PGA1_c03130 0.65 -0.6
302,294 - PGA1_c03130 0.66 +0.2
302,294 - PGA1_c03130 0.66 +0.3
302,301 + PGA1_c03130 0.68 -0.0
302,301 + PGA1_c03130 0.68 -0.5
302,312 + PGA1_c03130 0.70 -0.0
302,375 + PGA1_c03130 0.81 -0.7
302,375 + PGA1_c03130 0.81 -1.0
302,438 + +1.4
302,454 - -0.2
302,463 - +1.4
302,465 + -2.1
302,470 + -0.0
302,503 - -1.1

Or see this region's nucleotide sequence