Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07520

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07510 and PGA1_c07520 are separated by 31 nucleotidesPGA1_c07520 and PGA1_c07530 are separated by 64 nucleotidesPGA1_c07530 and PGA1_c07540 are separated by 362 nucleotides PGA1_c07510: PGA1_c07510 - DNA/RNA helicase-like protein, at 774,796 to 777,813 _c07510 PGA1_c07520: PGA1_c07520 - putative heat shock protein, at 777,845 to 778,210 _c07520 PGA1_c07530: PGA1_c07530 - ferredoxin FdxA, at 778,275 to 778,613 _c07530 PGA1_c07540: PGA1_c07540 - transcription factor carD-like protein, at 778,976 to 779,488 _c07540 Position (kb) 777 778 779Strain fitness (log2 ratio) -2 -1 0 1at 776.862 kb on - strand, within PGA1_c07510at 776.896 kb on + strand, within PGA1_c07510at 777.007 kb on + strand, within PGA1_c07510at 777.007 kb on + strand, within PGA1_c07510at 777.153 kb on - strand, within PGA1_c07510at 777.267 kb on + strand, within PGA1_c07510at 777.270 kb on - strand, within PGA1_c07510at 777.304 kb on + strand, within PGA1_c07510at 777.310 kb on - strand, within PGA1_c07510at 777.521 kb on - strandat 777.528 kb on - strandat 777.544 kb on - strandat 777.608 kb on - strandat 777.714 kb on - strandat 777.717 kb on - strandat 777.720 kb on + strandat 777.720 kb on + strandat 777.768 kb on - strandat 777.792 kb on - strandat 777.796 kb on - strandat 777.900 kb on + strand, within PGA1_c07520at 777.900 kb on + strand, within PGA1_c07520at 777.900 kb on - strand, within PGA1_c07520at 777.922 kb on + strand, within PGA1_c07520at 777.930 kb on - strand, within PGA1_c07520at 778.057 kb on + strand, within PGA1_c07520at 778.060 kb on - strand, within PGA1_c07520at 778.150 kb on - strand, within PGA1_c07520at 778.184 kb on - strandat 778.633 kb on - strandat 778.650 kb on - strandat 778.738 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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776,862 - PGA1_c07510 0.68 -0.9
776,896 + PGA1_c07510 0.70 -0.6
777,007 + PGA1_c07510 0.73 -0.0
777,007 + PGA1_c07510 0.73 -1.4
777,153 - PGA1_c07510 0.78 -0.2
777,267 + PGA1_c07510 0.82 -1.2
777,270 - PGA1_c07510 0.82 -1.4
777,304 + PGA1_c07510 0.83 -1.6
777,310 - PGA1_c07510 0.83 -1.5
777,521 - -2.3
777,528 - -2.4
777,544 - -0.4
777,608 - +0.6
777,714 - -0.3
777,717 - -0.4
777,720 + -1.1
777,720 + -0.6
777,768 - +0.9
777,792 - -0.4
777,796 - -1.3
777,900 + PGA1_c07520 0.15 -0.1
777,900 + PGA1_c07520 0.15 +0.8
777,900 - PGA1_c07520 0.15 -0.1
777,922 + PGA1_c07520 0.21 -1.3
777,930 - PGA1_c07520 0.23 +0.3
778,057 + PGA1_c07520 0.58 -1.8
778,060 - PGA1_c07520 0.59 -0.8
778,150 - PGA1_c07520 0.83 +0.8
778,184 - -0.8
778,633 - -1.6
778,650 - -0.6
778,738 + -0.6

Or see this region's nucleotide sequence