Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02790

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02780 and PGA1_c02790 are separated by 3 nucleotidesPGA1_c02790 and PGA1_c02800 are separated by 80 nucleotidesPGA1_c02800 and PGA1_c02810 are separated by 43 nucleotides PGA1_c02780: PGA1_c02780 - Membrane-bound metallopeptidase, at 267,155 to 268,339 _c02780 PGA1_c02790: PGA1_c02790 - putative carboxy-terminal-processing protease, at 268,343 to 269,686 _c02790 PGA1_c02800: PGA1_c02800 - putative transcriptional regulator, AraC family, at 269,767 to 270,639 _c02800 PGA1_c02810: PGA1_c02810 - P-hydroxybenzoate hydroxylase PobA, at 270,683 to 271,909 _c02810 Position (kb) 268 269 270Strain fitness (log2 ratio) -3 -2 -1 0 1at 267.354 kb on - strand, within PGA1_c02780at 267.413 kb on + strand, within PGA1_c02780at 267.413 kb on + strand, within PGA1_c02780at 267.421 kb on - strand, within PGA1_c02780at 267.421 kb on - strand, within PGA1_c02780at 267.421 kb on - strand, within PGA1_c02780at 267.564 kb on - strand, within PGA1_c02780at 267.564 kb on - strand, within PGA1_c02780at 267.646 kb on + strand, within PGA1_c02780at 267.689 kb on - strand, within PGA1_c02780at 267.706 kb on - strand, within PGA1_c02780at 267.706 kb on - strand, within PGA1_c02780at 267.706 kb on - strand, within PGA1_c02780at 267.708 kb on + strand, within PGA1_c02780at 267.708 kb on + strand, within PGA1_c02780at 267.723 kb on + strand, within PGA1_c02780at 267.723 kb on + strand, within PGA1_c02780at 267.723 kb on + strand, within PGA1_c02780at 267.723 kb on + strand, within PGA1_c02780at 267.723 kb on + strand, within PGA1_c02780at 267.731 kb on - strand, within PGA1_c02780at 267.731 kb on - strand, within PGA1_c02780at 267.795 kb on + strand, within PGA1_c02780at 267.795 kb on + strand, within PGA1_c02780at 267.855 kb on - strand, within PGA1_c02780at 267.929 kb on + strand, within PGA1_c02780at 267.930 kb on + strand, within PGA1_c02780at 267.934 kb on + strand, within PGA1_c02780at 267.938 kb on - strand, within PGA1_c02780at 268.019 kb on - strand, within PGA1_c02780at 268.127 kb on + strand, within PGA1_c02780at 268.135 kb on + strand, within PGA1_c02780at 268.135 kb on + strand, within PGA1_c02780at 268.156 kb on - strand, within PGA1_c02780at 268.237 kb on + strandat 268.245 kb on - strandat 268.266 kb on + strandat 268.377 kb on - strandat 268.389 kb on - strandat 268.404 kb on + strandat 268.437 kb on + strandat 268.461 kb on + strandat 268.506 kb on + strand, within PGA1_c02790at 268.532 kb on - strand, within PGA1_c02790at 268.597 kb on + strand, within PGA1_c02790at 268.634 kb on - strand, within PGA1_c02790at 268.658 kb on - strand, within PGA1_c02790at 268.769 kb on + strand, within PGA1_c02790at 268.769 kb on + strand, within PGA1_c02790at 268.781 kb on + strand, within PGA1_c02790at 268.786 kb on + strand, within PGA1_c02790at 268.789 kb on - strand, within PGA1_c02790at 268.789 kb on - strand, within PGA1_c02790at 268.820 kb on + strand, within PGA1_c02790at 268.820 kb on + strand, within PGA1_c02790at 268.831 kb on + strand, within PGA1_c02790at 268.989 kb on - strand, within PGA1_c02790at 269.021 kb on + strand, within PGA1_c02790at 269.034 kb on - strand, within PGA1_c02790at 269.078 kb on - strand, within PGA1_c02790at 269.148 kb on + strand, within PGA1_c02790at 269.156 kb on - strand, within PGA1_c02790at 269.158 kb on + strand, within PGA1_c02790at 269.218 kb on + strand, within PGA1_c02790at 269.226 kb on - strand, within PGA1_c02790at 269.377 kb on + strand, within PGA1_c02790at 269.385 kb on - strand, within PGA1_c02790at 269.387 kb on + strand, within PGA1_c02790at 269.387 kb on - strand, within PGA1_c02790at 269.395 kb on - strand, within PGA1_c02790at 269.495 kb on + strand, within PGA1_c02790at 269.536 kb on - strand, within PGA1_c02790at 269.546 kb on - strand, within PGA1_c02790at 269.632 kb on + strandat 269.692 kb on + strandat 269.693 kb on + strandat 269.698 kb on + strandat 269.698 kb on + strandat 269.701 kb on - strandat 269.753 kb on + strandat 269.770 kb on - strandat 269.851 kb on + strandat 270.009 kb on - strand, within PGA1_c02800at 270.107 kb on - strand, within PGA1_c02800at 270.115 kb on - strand, within PGA1_c02800at 270.140 kb on + strand, within PGA1_c02800at 270.140 kb on + strand, within PGA1_c02800at 270.140 kb on + strand, within PGA1_c02800at 270.148 kb on - strand, within PGA1_c02800at 270.148 kb on - strand, within PGA1_c02800at 270.148 kb on - strand, within PGA1_c02800at 270.158 kb on - strand, within PGA1_c02800at 270.189 kb on + strand, within PGA1_c02800at 270.189 kb on + strand, within PGA1_c02800at 270.197 kb on - strand, within PGA1_c02800at 270.197 kb on - strand, within PGA1_c02800at 270.260 kb on + strand, within PGA1_c02800at 270.294 kb on - strand, within PGA1_c02800at 270.294 kb on - strand, within PGA1_c02800at 270.370 kb on - strand, within PGA1_c02800at 270.463 kb on - strand, within PGA1_c02800at 270.532 kb on + strand, within PGA1_c02800at 270.606 kb on + strandat 270.606 kb on + strandat 270.617 kb on + strandat 270.632 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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267,354 - PGA1_c02780 0.17 -0.1
267,413 + PGA1_c02780 0.22 -0.7
267,413 + PGA1_c02780 0.22 +0.7
267,421 - PGA1_c02780 0.22 +0.9
267,421 - PGA1_c02780 0.22 +0.8
267,421 - PGA1_c02780 0.22 -0.1
267,564 - PGA1_c02780 0.35 -0.2
267,564 - PGA1_c02780 0.35 +0.8
267,646 + PGA1_c02780 0.41 +1.7
267,689 - PGA1_c02780 0.45 +0.6
267,706 - PGA1_c02780 0.46 +1.2
267,706 - PGA1_c02780 0.46 -0.3
267,706 - PGA1_c02780 0.46 -0.0
267,708 + PGA1_c02780 0.47 +0.5
267,708 + PGA1_c02780 0.47 +0.1
267,723 + PGA1_c02780 0.48 +0.5
267,723 + PGA1_c02780 0.48 +1.1
267,723 + PGA1_c02780 0.48 +0.1
267,723 + PGA1_c02780 0.48 +0.8
267,723 + PGA1_c02780 0.48 +0.5
267,731 - PGA1_c02780 0.49 +0.4
267,731 - PGA1_c02780 0.49 +0.7
267,795 + PGA1_c02780 0.54 +0.6
267,795 + PGA1_c02780 0.54 -0.4
267,855 - PGA1_c02780 0.59 +0.2
267,929 + PGA1_c02780 0.65 +1.1
267,930 + PGA1_c02780 0.65 +1.0
267,934 + PGA1_c02780 0.66 -0.2
267,938 - PGA1_c02780 0.66 +0.8
268,019 - PGA1_c02780 0.73 +0.1
268,127 + PGA1_c02780 0.82 -1.3
268,135 + PGA1_c02780 0.83 -0.0
268,135 + PGA1_c02780 0.83 +0.2
268,156 - PGA1_c02780 0.84 +0.4
268,237 + +0.2
268,245 - +0.5
268,266 + -0.1
268,377 - -1.6
268,389 - -1.5
268,404 + -2.2
268,437 + -0.1
268,461 + -0.8
268,506 + PGA1_c02790 0.12 -1.6
268,532 - PGA1_c02790 0.14 -1.2
268,597 + PGA1_c02790 0.19 -2.2
268,634 - PGA1_c02790 0.22 -1.6
268,658 - PGA1_c02790 0.23 +0.1
268,769 + PGA1_c02790 0.32 -1.3
268,769 + PGA1_c02790 0.32 -1.5
268,781 + PGA1_c02790 0.33 -3.0
268,786 + PGA1_c02790 0.33 -2.8
268,789 - PGA1_c02790 0.33 -3.1
268,789 - PGA1_c02790 0.33 -0.4
268,820 + PGA1_c02790 0.35 -2.5
268,820 + PGA1_c02790 0.35 -2.3
268,831 + PGA1_c02790 0.36 -1.3
268,989 - PGA1_c02790 0.48 -2.0
269,021 + PGA1_c02790 0.50 -2.4
269,034 - PGA1_c02790 0.51 -2.6
269,078 - PGA1_c02790 0.55 -0.2
269,148 + PGA1_c02790 0.60 -0.9
269,156 - PGA1_c02790 0.60 -2.2
269,158 + PGA1_c02790 0.61 -1.4
269,218 + PGA1_c02790 0.65 -1.5
269,226 - PGA1_c02790 0.66 -0.6
269,377 + PGA1_c02790 0.77 -0.3
269,385 - PGA1_c02790 0.78 -2.9
269,387 + PGA1_c02790 0.78 -1.4
269,387 - PGA1_c02790 0.78 -1.2
269,395 - PGA1_c02790 0.78 +0.2
269,495 + PGA1_c02790 0.86 -0.9
269,536 - PGA1_c02790 0.89 -2.1
269,546 - PGA1_c02790 0.90 +0.7
269,632 + -1.8
269,692 + +0.9
269,693 + +0.3
269,698 + -0.6
269,698 + +0.7
269,701 - +0.3
269,753 + +0.2
269,770 - -0.6
269,851 + -0.3
270,009 - PGA1_c02800 0.28 +0.4
270,107 - PGA1_c02800 0.39 +0.2
270,115 - PGA1_c02800 0.40 +0.1
270,140 + PGA1_c02800 0.43 -0.0
270,140 + PGA1_c02800 0.43 +0.8
270,140 + PGA1_c02800 0.43 +0.2
270,148 - PGA1_c02800 0.44 +0.1
270,148 - PGA1_c02800 0.44 -0.5
270,148 - PGA1_c02800 0.44 -0.4
270,158 - PGA1_c02800 0.45 +0.4
270,189 + PGA1_c02800 0.48 -0.8
270,189 + PGA1_c02800 0.48 -0.2
270,197 - PGA1_c02800 0.49 -0.5
270,197 - PGA1_c02800 0.49 -1.2
270,260 + PGA1_c02800 0.56 +0.1
270,294 - PGA1_c02800 0.60 -0.4
270,294 - PGA1_c02800 0.60 -1.0
270,370 - PGA1_c02800 0.69 +0.4
270,463 - PGA1_c02800 0.80 -0.5
270,532 + PGA1_c02800 0.88 +0.8
270,606 + -1.1
270,606 + -0.4
270,617 + -0.6
270,632 - -0.4

Or see this region's nucleotide sequence