Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02750

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02740 and PGA1_c02750 overlap by 4 nucleotidesPGA1_c02750 and PGA1_c02760 are separated by 102 nucleotides PGA1_c02740: PGA1_c02740 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 262,301 to 263,347 _c02740 PGA1_c02750: PGA1_c02750 - Metal-dependent hydrolase, at 263,344 to 264,345 _c02750 PGA1_c02760: PGA1_c02760 - putative methylated-DNA--protein-cysteine methyltransferase, at 264,448 to 265,518 _c02760 Position (kb) 263 264 265Strain fitness (log2 ratio) -2 -1 0 1at 262.347 kb on + strandat 262.348 kb on + strandat 262.377 kb on + strandat 262.377 kb on + strandat 262.385 kb on - strandat 262.455 kb on + strand, within PGA1_c02740at 262.455 kb on + strand, within PGA1_c02740at 262.463 kb on - strand, within PGA1_c02740at 262.501 kb on + strand, within PGA1_c02740at 262.617 kb on - strand, within PGA1_c02740at 262.643 kb on - strand, within PGA1_c02740at 262.721 kb on - strand, within PGA1_c02740at 262.740 kb on + strand, within PGA1_c02740at 262.799 kb on + strand, within PGA1_c02740at 262.828 kb on + strand, within PGA1_c02740at 262.833 kb on + strand, within PGA1_c02740at 262.838 kb on + strand, within PGA1_c02740at 262.848 kb on + strand, within PGA1_c02740at 262.849 kb on + strand, within PGA1_c02740at 262.883 kb on - strand, within PGA1_c02740at 262.945 kb on + strand, within PGA1_c02740at 262.945 kb on + strand, within PGA1_c02740at 262.953 kb on - strand, within PGA1_c02740at 263.007 kb on - strand, within PGA1_c02740at 263.109 kb on + strand, within PGA1_c02740at 263.172 kb on + strand, within PGA1_c02740at 263.228 kb on + strand, within PGA1_c02740at 263.228 kb on + strand, within PGA1_c02740at 263.228 kb on + strand, within PGA1_c02740at 263.241 kb on + strand, within PGA1_c02740at 263.241 kb on + strand, within PGA1_c02740at 263.273 kb on + strandat 263.361 kb on - strandat 263.371 kb on - strandat 263.384 kb on + strandat 263.397 kb on + strandat 263.402 kb on + strandat 263.405 kb on - strandat 263.405 kb on - strandat 263.405 kb on - strandat 263.405 kb on - strandat 263.405 kb on - strandat 263.405 kb on - strandat 263.407 kb on + strandat 263.523 kb on + strand, within PGA1_c02750at 263.547 kb on + strand, within PGA1_c02750at 263.556 kb on + strand, within PGA1_c02750at 263.604 kb on + strand, within PGA1_c02750at 263.635 kb on + strand, within PGA1_c02750at 263.635 kb on + strand, within PGA1_c02750at 263.643 kb on - strand, within PGA1_c02750at 263.643 kb on - strand, within PGA1_c02750at 263.648 kb on + strand, within PGA1_c02750at 263.649 kb on - strand, within PGA1_c02750at 263.668 kb on + strand, within PGA1_c02750at 263.726 kb on - strand, within PGA1_c02750at 263.731 kb on - strand, within PGA1_c02750at 263.810 kb on + strand, within PGA1_c02750at 263.810 kb on + strand, within PGA1_c02750at 263.818 kb on - strand, within PGA1_c02750at 263.823 kb on - strand, within PGA1_c02750at 263.823 kb on - strand, within PGA1_c02750at 263.823 kb on - strand, within PGA1_c02750at 263.823 kb on - strand, within PGA1_c02750at 263.950 kb on + strand, within PGA1_c02750at 263.950 kb on + strand, within PGA1_c02750at 263.958 kb on - strand, within PGA1_c02750at 263.983 kb on + strand, within PGA1_c02750at 263.991 kb on - strand, within PGA1_c02750at 263.991 kb on - strand, within PGA1_c02750at 264.039 kb on + strand, within PGA1_c02750at 264.040 kb on + strand, within PGA1_c02750at 264.044 kb on + strand, within PGA1_c02750at 264.062 kb on - strand, within PGA1_c02750at 264.062 kb on - strand, within PGA1_c02750at 264.064 kb on + strand, within PGA1_c02750at 264.120 kb on + strand, within PGA1_c02750at 264.141 kb on + strand, within PGA1_c02750at 264.142 kb on + strand, within PGA1_c02750at 264.142 kb on + strand, within PGA1_c02750at 264.143 kb on + strand, within PGA1_c02750at 264.150 kb on - strand, within PGA1_c02750at 264.150 kb on - strand, within PGA1_c02750at 264.183 kb on + strand, within PGA1_c02750at 264.190 kb on - strand, within PGA1_c02750at 264.247 kb on - strandat 264.256 kb on + strandat 264.256 kb on + strandat 264.256 kb on + strandat 264.259 kb on - strandat 264.264 kb on - strandat 264.264 kb on - strandat 264.264 kb on - strandat 264.265 kb on + strandat 264.273 kb on + strandat 264.273 kb on - strandat 264.293 kb on + strandat 264.319 kb on + strandat 264.319 kb on + strandat 264.319 kb on + strandat 264.327 kb on - strandat 264.427 kb on + strandat 264.427 kb on + strandat 264.427 kb on + strandat 264.427 kb on + strandat 264.427 kb on + strandat 264.427 kb on + strandat 264.427 kb on + strandat 264.432 kb on + strandat 264.435 kb on - strandat 264.435 kb on - strandat 264.440 kb on - strandat 264.440 kb on - strandat 264.440 kb on - strandat 264.523 kb on + strandat 264.531 kb on - strandat 264.531 kb on - strandat 264.614 kb on + strand, within PGA1_c02760at 264.622 kb on - strand, within PGA1_c02760at 264.622 kb on - strand, within PGA1_c02760at 264.647 kb on + strand, within PGA1_c02760at 264.655 kb on - strand, within PGA1_c02760at 264.656 kb on - strand, within PGA1_c02760at 264.741 kb on - strand, within PGA1_c02760at 264.748 kb on - strand, within PGA1_c02760at 264.770 kb on + strand, within PGA1_c02760at 264.770 kb on + strand, within PGA1_c02760at 264.795 kb on - strand, within PGA1_c02760at 264.805 kb on - strand, within PGA1_c02760at 264.833 kb on + strand, within PGA1_c02760at 264.859 kb on + strand, within PGA1_c02760at 264.877 kb on + strand, within PGA1_c02760at 264.921 kb on - strand, within PGA1_c02760at 264.943 kb on + strand, within PGA1_c02760at 264.951 kb on - strand, within PGA1_c02760at 265.057 kb on + strand, within PGA1_c02760at 265.065 kb on - strand, within PGA1_c02760at 265.068 kb on + strand, within PGA1_c02760at 265.090 kb on + strand, within PGA1_c02760at 265.098 kb on - strand, within PGA1_c02760at 265.156 kb on - strand, within PGA1_c02760at 265.170 kb on + strand, within PGA1_c02760at 265.178 kb on - strand, within PGA1_c02760at 265.215 kb on + strand, within PGA1_c02760at 265.215 kb on + strand, within PGA1_c02760at 265.225 kb on + strand, within PGA1_c02760at 265.225 kb on + strand, within PGA1_c02760at 265.233 kb on - strand, within PGA1_c02760at 265.233 kb on - strand, within PGA1_c02760at 265.233 kb on - strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.260 kb on + strand, within PGA1_c02760at 265.268 kb on - strand, within PGA1_c02760at 265.268 kb on - strand, within PGA1_c02760at 265.268 kb on - strand, within PGA1_c02760at 265.268 kb on - strand, within PGA1_c02760at 265.268 kb on - strand, within PGA1_c02760at 265.268 kb on - strand, within PGA1_c02760at 265.268 kb on - strand, within PGA1_c02760at 265.307 kb on + strand, within PGA1_c02760at 265.325 kb on + strand, within PGA1_c02760

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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262,347 + -2.0
262,348 + -0.7
262,377 + +0.1
262,377 + +0.3
262,385 - -0.6
262,455 + PGA1_c02740 0.15 +1.1
262,455 + PGA1_c02740 0.15 -0.3
262,463 - PGA1_c02740 0.15 -0.4
262,501 + PGA1_c02740 0.19 +1.1
262,617 - PGA1_c02740 0.30 +1.7
262,643 - PGA1_c02740 0.33 -0.5
262,721 - PGA1_c02740 0.40 -0.6
262,740 + PGA1_c02740 0.42 -0.8
262,799 + PGA1_c02740 0.48 +0.5
262,828 + PGA1_c02740 0.50 -1.5
262,833 + PGA1_c02740 0.51 +0.4
262,838 + PGA1_c02740 0.51 -0.1
262,848 + PGA1_c02740 0.52 -0.9
262,849 + PGA1_c02740 0.52 +0.2
262,883 - PGA1_c02740 0.56 +0.6
262,945 + PGA1_c02740 0.62 +0.4
262,945 + PGA1_c02740 0.62 +0.3
262,953 - PGA1_c02740 0.62 +0.8
263,007 - PGA1_c02740 0.67 -0.9
263,109 + PGA1_c02740 0.77 +1.1
263,172 + PGA1_c02740 0.83 +0.8
263,228 + PGA1_c02740 0.89 +0.7
263,228 + PGA1_c02740 0.89 +0.6
263,228 + PGA1_c02740 0.89 -1.7
263,241 + PGA1_c02740 0.90 -0.1
263,241 + PGA1_c02740 0.90 +0.6
263,273 + -0.4
263,361 - -0.4
263,371 - +0.9
263,384 + -1.7
263,397 + -0.2
263,402 + +0.7
263,405 - -0.3
263,405 - +0.8
263,405 - +0.3
263,405 - +0.5
263,405 - -0.4
263,405 - -0.3
263,407 + +0.5
263,523 + PGA1_c02750 0.18 -0.1
263,547 + PGA1_c02750 0.20 +0.9
263,556 + PGA1_c02750 0.21 -1.8
263,604 + PGA1_c02750 0.26 +0.4
263,635 + PGA1_c02750 0.29 -0.4
263,635 + PGA1_c02750 0.29 +0.0
263,643 - PGA1_c02750 0.30 +0.4
263,643 - PGA1_c02750 0.30 +0.2
263,648 + PGA1_c02750 0.30 -0.2
263,649 - PGA1_c02750 0.30 -1.5
263,668 + PGA1_c02750 0.32 +1.7
263,726 - PGA1_c02750 0.38 -0.8
263,731 - PGA1_c02750 0.39 -1.1
263,810 + PGA1_c02750 0.47 +0.0
263,810 + PGA1_c02750 0.47 +1.5
263,818 - PGA1_c02750 0.47 -2.1
263,823 - PGA1_c02750 0.48 -0.3
263,823 - PGA1_c02750 0.48 +0.4
263,823 - PGA1_c02750 0.48 +0.3
263,823 - PGA1_c02750 0.48 -1.1
263,950 + PGA1_c02750 0.60 +0.3
263,950 + PGA1_c02750 0.60 -0.2
263,958 - PGA1_c02750 0.61 -0.1
263,983 + PGA1_c02750 0.64 +0.8
263,991 - PGA1_c02750 0.65 -1.1
263,991 - PGA1_c02750 0.65 +0.3
264,039 + PGA1_c02750 0.69 +0.2
264,040 + PGA1_c02750 0.69 -0.7
264,044 + PGA1_c02750 0.70 +1.5
264,062 - PGA1_c02750 0.72 +0.7
264,062 - PGA1_c02750 0.72 +0.9
264,064 + PGA1_c02750 0.72 +0.5
264,120 + PGA1_c02750 0.77 +0.4
264,141 + PGA1_c02750 0.80 +0.2
264,142 + PGA1_c02750 0.80 -0.4
264,142 + PGA1_c02750 0.80 +0.9
264,143 + PGA1_c02750 0.80 -0.6
264,150 - PGA1_c02750 0.80 -0.8
264,150 - PGA1_c02750 0.80 -0.4
264,183 + PGA1_c02750 0.84 -0.3
264,190 - PGA1_c02750 0.84 -0.6
264,247 - -1.3
264,256 + -0.6
264,256 + -0.8
264,256 + -0.1
264,259 - +0.4
264,264 - +0.0
264,264 - +0.9
264,264 - +0.9
264,265 + -1.1
264,273 + +0.4
264,273 - +0.3
264,293 + +0.1
264,319 + -1.1
264,319 + -0.1
264,319 + -0.1
264,327 - -1.1
264,427 + -0.1
264,427 + -1.1
264,427 + -1.8
264,427 + -1.0
264,427 + +1.4
264,427 + +0.5
264,427 + -0.5
264,432 + -0.8
264,435 - -0.1
264,435 - -0.7
264,440 - +0.5
264,440 - +0.6
264,440 - -1.7
264,523 + -1.1
264,531 - -0.7
264,531 - +1.0
264,614 + PGA1_c02760 0.15 -1.1
264,622 - PGA1_c02760 0.16 +0.4
264,622 - PGA1_c02760 0.16 -0.8
264,647 + PGA1_c02760 0.19 -0.1
264,655 - PGA1_c02760 0.19 +0.0
264,656 - PGA1_c02760 0.19 +0.4
264,741 - PGA1_c02760 0.27 +0.3
264,748 - PGA1_c02760 0.28 +0.5
264,770 + PGA1_c02760 0.30 -0.9
264,770 + PGA1_c02760 0.30 -0.6
264,795 - PGA1_c02760 0.32 -0.2
264,805 - PGA1_c02760 0.33 -0.3
264,833 + PGA1_c02760 0.36 -2.5
264,859 + PGA1_c02760 0.38 +0.6
264,877 + PGA1_c02760 0.40 -0.4
264,921 - PGA1_c02760 0.44 -1.0
264,943 + PGA1_c02760 0.46 -1.7
264,951 - PGA1_c02760 0.47 -0.9
265,057 + PGA1_c02760 0.57 -0.4
265,065 - PGA1_c02760 0.58 -0.3
265,068 + PGA1_c02760 0.58 +1.2
265,090 + PGA1_c02760 0.60 -1.1
265,098 - PGA1_c02760 0.61 +1.0
265,156 - PGA1_c02760 0.66 +0.1
265,170 + PGA1_c02760 0.67 -0.7
265,178 - PGA1_c02760 0.68 +0.5
265,215 + PGA1_c02760 0.72 -0.2
265,215 + PGA1_c02760 0.72 -0.2
265,225 + PGA1_c02760 0.73 -0.7
265,225 + PGA1_c02760 0.73 +0.6
265,233 - PGA1_c02760 0.73 +0.8
265,233 - PGA1_c02760 0.73 +0.3
265,233 - PGA1_c02760 0.73 +0.3
265,260 + PGA1_c02760 0.76 -0.4
265,260 + PGA1_c02760 0.76 +0.8
265,260 + PGA1_c02760 0.76 -0.0
265,260 + PGA1_c02760 0.76 -0.2
265,260 + PGA1_c02760 0.76 +1.0
265,260 + PGA1_c02760 0.76 +0.1
265,260 + PGA1_c02760 0.76 -0.1
265,260 + PGA1_c02760 0.76 -0.3
265,260 + PGA1_c02760 0.76 -0.4
265,260 + PGA1_c02760 0.76 +0.1
265,260 + PGA1_c02760 0.76 -0.4
265,260 + PGA1_c02760 0.76 -0.2
265,260 + PGA1_c02760 0.76 +0.3
265,260 + PGA1_c02760 0.76 -1.1
265,260 + PGA1_c02760 0.76 -1.2
265,268 - PGA1_c02760 0.77 +1.2
265,268 - PGA1_c02760 0.77 +0.8
265,268 - PGA1_c02760 0.77 +0.4
265,268 - PGA1_c02760 0.77 -0.7
265,268 - PGA1_c02760 0.77 +0.8
265,268 - PGA1_c02760 0.77 +0.2
265,268 - PGA1_c02760 0.77 -0.4
265,307 + PGA1_c02760 0.80 -1.1
265,325 + PGA1_c02760 0.82 +0.0

Or see this region's nucleotide sequence