Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2560 and HP15_2561 overlap by 27 nucleotides HP15_2561 and HP15_2562 are separated by 10 nucleotides HP15_2562 and HP15_2563 are separated by 65 nucleotides
HP15_2560: HP15_2560 - TRAP dicarboxylate transporter- DctP subunit, at 2,706,000 to 2,707,103
_2560
HP15_2561: HP15_2561 - MscS Mechanosensitive ion channel, at 2,707,077 to 2,707,880
_2561
HP15_2562: HP15_2562 - conserved hypothetical protein, at 2,707,891 to 2,709,126
_2562
HP15_2563: HP15_2563 - protein containing DUF519, at 2,709,192 to 2,710,031
_2563
Position (kb)
2707
2708
2709
2710 Strain fitness (log2 ratio)
-1
0
1 at 2706.986 kb on + strand, within HP15_2560 at 2707.083 kb on - strand at 2707.083 kb on - strand at 2707.121 kb on + strand at 2707.198 kb on + strand, within HP15_2561 at 2707.279 kb on + strand, within HP15_2561 at 2707.356 kb on + strand, within HP15_2561 at 2707.356 kb on + strand, within HP15_2561 at 2707.483 kb on + strand, within HP15_2561 at 2707.483 kb on + strand, within HP15_2561 at 2707.549 kb on - strand, within HP15_2561 at 2707.550 kb on - strand, within HP15_2561 at 2707.598 kb on - strand, within HP15_2561 at 2707.653 kb on + strand, within HP15_2561 at 2707.785 kb on + strand, within HP15_2561 at 2707.793 kb on - strand, within HP15_2561 at 2707.793 kb on - strand, within HP15_2561 at 2708.008 kb on + strand at 2708.008 kb on + strand at 2708.012 kb on + strand at 2708.016 kb on - strand, within HP15_2562 at 2708.022 kb on + strand, within HP15_2562 at 2708.067 kb on + strand, within HP15_2562 at 2708.115 kb on + strand, within HP15_2562 at 2708.123 kb on - strand, within HP15_2562 at 2708.185 kb on - strand, within HP15_2562 at 2708.213 kb on - strand, within HP15_2562 at 2708.770 kb on - strand, within HP15_2562 at 2709.025 kb on - strand at 2709.040 kb on + strand at 2709.265 kb on + strand at 2709.371 kb on - strand, within HP15_2563 at 2709.434 kb on - strand, within HP15_2563 at 2709.434 kb on - strand, within HP15_2563 at 2709.522 kb on - strand, within HP15_2563 at 2709.532 kb on + strand, within HP15_2563 at 2709.532 kb on + strand, within HP15_2563 at 2709.615 kb on + strand, within HP15_2563 at 2709.751 kb on - strand, within HP15_2563 at 2709.854 kb on + strand, within HP15_2563 at 2709.896 kb on - strand, within HP15_2563 at 2709.896 kb on - strand, within HP15_2563 at 2710.099 kb on + strand at 2710.099 kb on + strand at 2710.107 kb on - strand at 2710.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 2,706,986 + HP15_2560 0.89 -0.3 2,707,083 - +0.5 2,707,083 - +0.6 2,707,121 + -0.1 2,707,198 + HP15_2561 0.15 -0.5 2,707,279 + HP15_2561 0.25 -0.4 2,707,356 + HP15_2561 0.35 +0.4 2,707,356 + HP15_2561 0.35 +1.1 2,707,483 + HP15_2561 0.50 +0.3 2,707,483 + HP15_2561 0.50 -0.6 2,707,549 - HP15_2561 0.59 -0.7 2,707,550 - HP15_2561 0.59 -0.3 2,707,598 - HP15_2561 0.65 -0.1 2,707,653 + HP15_2561 0.72 +0.5 2,707,785 + HP15_2561 0.88 -0.3 2,707,793 - HP15_2561 0.89 +0.8 2,707,793 - HP15_2561 0.89 +0.2 2,708,008 + +0.6 2,708,008 + +0.4 2,708,012 + -0.1 2,708,016 - HP15_2562 0.10 -0.5 2,708,022 + HP15_2562 0.11 -0.0 2,708,067 + HP15_2562 0.14 +0.3 2,708,115 + HP15_2562 0.18 -1.4 2,708,123 - HP15_2562 0.19 -0.0 2,708,185 - HP15_2562 0.24 +1.1 2,708,213 - HP15_2562 0.26 -0.5 2,708,770 - HP15_2562 0.71 -0.6 2,709,025 - +1.0 2,709,040 + -0.1 2,709,265 + +0.0 2,709,371 - HP15_2563 0.21 +0.8 2,709,434 - HP15_2563 0.29 +0.5 2,709,434 - HP15_2563 0.29 -0.2 2,709,522 - HP15_2563 0.39 -0.8 2,709,532 + HP15_2563 0.40 +0.4 2,709,532 + HP15_2563 0.40 -0.4 2,709,615 + HP15_2563 0.50 -0.6 2,709,751 - HP15_2563 0.67 +0.6 2,709,854 + HP15_2563 0.79 +0.1 2,709,896 - HP15_2563 0.84 -1.1 2,709,896 - HP15_2563 0.84 -0.1 2,710,099 + +0.2 2,710,099 + +0.6 2,710,107 - +0.6 2,710,107 - +0.9
Or see this region's nucleotide sequence