Strain Fitness in Marinobacter adhaerens HP15 around HP15_2562

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2560 and HP15_2561 overlap by 27 nucleotidesHP15_2561 and HP15_2562 are separated by 10 nucleotidesHP15_2562 and HP15_2563 are separated by 65 nucleotides HP15_2560: HP15_2560 - TRAP dicarboxylate transporter- DctP subunit, at 2,706,000 to 2,707,103 _2560 HP15_2561: HP15_2561 - MscS Mechanosensitive ion channel, at 2,707,077 to 2,707,880 _2561 HP15_2562: HP15_2562 - conserved hypothetical protein, at 2,707,891 to 2,709,126 _2562 HP15_2563: HP15_2563 - protein containing DUF519, at 2,709,192 to 2,710,031 _2563 Position (kb) 2707 2708 2709 2710Strain fitness (log2 ratio) -1 0 1at 2706.986 kb on + strand, within HP15_2560at 2707.083 kb on - strandat 2707.083 kb on - strandat 2707.121 kb on + strandat 2707.198 kb on + strand, within HP15_2561at 2707.279 kb on + strand, within HP15_2561at 2707.356 kb on + strand, within HP15_2561at 2707.356 kb on + strand, within HP15_2561at 2707.483 kb on + strand, within HP15_2561at 2707.483 kb on + strand, within HP15_2561at 2707.549 kb on - strand, within HP15_2561at 2707.550 kb on - strand, within HP15_2561at 2707.598 kb on - strand, within HP15_2561at 2707.653 kb on + strand, within HP15_2561at 2707.785 kb on + strand, within HP15_2561at 2707.793 kb on - strand, within HP15_2561at 2707.793 kb on - strand, within HP15_2561at 2708.008 kb on + strandat 2708.008 kb on + strandat 2708.012 kb on + strandat 2708.016 kb on - strand, within HP15_2562at 2708.022 kb on + strand, within HP15_2562at 2708.067 kb on + strand, within HP15_2562at 2708.115 kb on + strand, within HP15_2562at 2708.123 kb on - strand, within HP15_2562at 2708.185 kb on - strand, within HP15_2562at 2708.213 kb on - strand, within HP15_2562at 2708.770 kb on - strand, within HP15_2562at 2709.025 kb on - strandat 2709.040 kb on + strandat 2709.265 kb on + strandat 2709.371 kb on - strand, within HP15_2563at 2709.434 kb on - strand, within HP15_2563at 2709.434 kb on - strand, within HP15_2563at 2709.522 kb on - strand, within HP15_2563at 2709.532 kb on + strand, within HP15_2563at 2709.532 kb on + strand, within HP15_2563at 2709.615 kb on + strand, within HP15_2563at 2709.751 kb on - strand, within HP15_2563at 2709.854 kb on + strand, within HP15_2563at 2709.896 kb on - strand, within HP15_2563at 2709.896 kb on - strand, within HP15_2563at 2710.099 kb on + strandat 2710.099 kb on + strandat 2710.107 kb on - strandat 2710.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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2,706,986 + HP15_2560 0.89 -0.3
2,707,083 - +0.5
2,707,083 - +0.6
2,707,121 + -0.1
2,707,198 + HP15_2561 0.15 -0.5
2,707,279 + HP15_2561 0.25 -0.4
2,707,356 + HP15_2561 0.35 +0.4
2,707,356 + HP15_2561 0.35 +1.1
2,707,483 + HP15_2561 0.50 +0.3
2,707,483 + HP15_2561 0.50 -0.6
2,707,549 - HP15_2561 0.59 -0.7
2,707,550 - HP15_2561 0.59 -0.3
2,707,598 - HP15_2561 0.65 -0.1
2,707,653 + HP15_2561 0.72 +0.5
2,707,785 + HP15_2561 0.88 -0.3
2,707,793 - HP15_2561 0.89 +0.8
2,707,793 - HP15_2561 0.89 +0.2
2,708,008 + +0.6
2,708,008 + +0.4
2,708,012 + -0.1
2,708,016 - HP15_2562 0.10 -0.5
2,708,022 + HP15_2562 0.11 -0.0
2,708,067 + HP15_2562 0.14 +0.3
2,708,115 + HP15_2562 0.18 -1.4
2,708,123 - HP15_2562 0.19 -0.0
2,708,185 - HP15_2562 0.24 +1.1
2,708,213 - HP15_2562 0.26 -0.5
2,708,770 - HP15_2562 0.71 -0.6
2,709,025 - +1.0
2,709,040 + -0.1
2,709,265 + +0.0
2,709,371 - HP15_2563 0.21 +0.8
2,709,434 - HP15_2563 0.29 +0.5
2,709,434 - HP15_2563 0.29 -0.2
2,709,522 - HP15_2563 0.39 -0.8
2,709,532 + HP15_2563 0.40 +0.4
2,709,532 + HP15_2563 0.40 -0.4
2,709,615 + HP15_2563 0.50 -0.6
2,709,751 - HP15_2563 0.67 +0.6
2,709,854 + HP15_2563 0.79 +0.1
2,709,896 - HP15_2563 0.84 -1.1
2,709,896 - HP15_2563 0.84 -0.1
2,710,099 + +0.2
2,710,099 + +0.6
2,710,107 - +0.6
2,710,107 - +0.9

Or see this region's nucleotide sequence