Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1131 and HP15_1132 are separated by 40 nucleotides HP15_1132 and HP15_1133 overlap by 4 nucleotides HP15_1133 and HP15_1134 are separated by 245 nucleotides
HP15_1131: HP15_1131 - alpha-L-glutamate ligase-like protein, at 1,159,961 to 1,160,869
_1131
HP15_1132: HP15_1132 - gonadoliberin III-related protein, at 1,160,910 to 1,162,427
_1132
HP15_1133: HP15_1133 - protein containing DUF785, at 1,162,424 to 1,163,122
_1133
HP15_1134: HP15_1134 - conserved hypothetical protein, at 1,163,368 to 1,163,757
_1134
Position (kb)
1160
1161
1162
1163 Strain fitness (log2 ratio)
-1
0
1 at 1160.007 kb on + strand at 1160.007 kb on + strand at 1160.015 kb on - strand at 1160.146 kb on + strand, within HP15_1131 at 1160.159 kb on - strand, within HP15_1131 at 1160.186 kb on + strand, within HP15_1131 at 1160.491 kb on - strand, within HP15_1131 at 1160.500 kb on + strand, within HP15_1131 at 1160.501 kb on + strand, within HP15_1131 at 1160.529 kb on - strand, within HP15_1131 at 1160.589 kb on - strand, within HP15_1131 at 1160.680 kb on - strand, within HP15_1131 at 1160.859 kb on + strand at 1160.975 kb on - strand at 1161.014 kb on - strand at 1161.075 kb on - strand, within HP15_1132 at 1161.076 kb on + strand, within HP15_1132 at 1161.084 kb on - strand, within HP15_1132 at 1161.192 kb on + strand, within HP15_1132 at 1161.231 kb on + strand, within HP15_1132 at 1161.306 kb on + strand, within HP15_1132 at 1161.376 kb on - strand, within HP15_1132 at 1161.524 kb on + strand, within HP15_1132 at 1161.524 kb on + strand, within HP15_1132 at 1161.571 kb on + strand, within HP15_1132 at 1161.701 kb on + strand, within HP15_1132 at 1161.709 kb on - strand, within HP15_1132 at 1161.788 kb on + strand, within HP15_1132 at 1161.854 kb on + strand, within HP15_1132 at 1161.854 kb on + strand, within HP15_1132 at 1161.929 kb on + strand, within HP15_1132 at 1161.937 kb on - strand, within HP15_1132 at 1161.964 kb on + strand, within HP15_1132 at 1161.982 kb on - strand, within HP15_1132 at 1162.080 kb on + strand, within HP15_1132 at 1162.087 kb on + strand, within HP15_1132 at 1162.205 kb on + strand, within HP15_1132 at 1162.236 kb on + strand, within HP15_1132 at 1162.436 kb on + strand at 1162.455 kb on + strand at 1162.481 kb on - strand at 1162.488 kb on + strand at 1162.498 kb on + strand, within HP15_1133 at 1162.498 kb on + strand, within HP15_1133 at 1162.506 kb on - strand, within HP15_1133 at 1162.526 kb on + strand, within HP15_1133 at 1162.526 kb on + strand, within HP15_1133 at 1162.534 kb on - strand, within HP15_1133 at 1162.633 kb on - strand, within HP15_1133 at 1162.646 kb on + strand, within HP15_1133 at 1162.646 kb on + strand, within HP15_1133 at 1162.646 kb on + strand, within HP15_1133 at 1162.654 kb on - strand, within HP15_1133 at 1162.715 kb on + strand, within HP15_1133 at 1162.820 kb on + strand, within HP15_1133 at 1163.006 kb on + strand, within HP15_1133 at 1163.006 kb on + strand, within HP15_1133 at 1163.006 kb on + strand, within HP15_1133 at 1163.014 kb on - strand, within HP15_1133 at 1163.014 kb on - strand, within HP15_1133 at 1163.014 kb on - strand, within HP15_1133 at 1163.014 kb on - strand, within HP15_1133 at 1163.014 kb on - strand, within HP15_1133 at 1163.019 kb on - strand, within HP15_1133 at 1163.085 kb on + strand at 1163.104 kb on + strand at 1163.152 kb on + strand at 1163.192 kb on - strand at 1163.236 kb on - strand at 1163.236 kb on - strand at 1163.236 kb on - strand at 1163.304 kb on + strand at 1163.307 kb on - strand at 1163.356 kb on - strand at 1163.364 kb on - strand at 1163.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 1,160,007 + +0.8 1,160,007 + -0.1 1,160,015 - -0.2 1,160,146 + HP15_1131 0.20 +0.2 1,160,159 - HP15_1131 0.22 -0.9 1,160,186 + HP15_1131 0.25 +0.9 1,160,491 - HP15_1131 0.58 -0.2 1,160,500 + HP15_1131 0.59 +1.2 1,160,501 + HP15_1131 0.59 +1.1 1,160,529 - HP15_1131 0.62 +0.3 1,160,589 - HP15_1131 0.69 -1.1 1,160,680 - HP15_1131 0.79 -0.2 1,160,859 + -0.0 1,160,975 - -0.2 1,161,014 - -0.3 1,161,075 - HP15_1132 0.11 -0.6 1,161,076 + HP15_1132 0.11 +1.1 1,161,084 - HP15_1132 0.11 +0.3 1,161,192 + HP15_1132 0.19 +0.1 1,161,231 + HP15_1132 0.21 +0.8 1,161,306 + HP15_1132 0.26 +0.6 1,161,376 - HP15_1132 0.31 -0.0 1,161,524 + HP15_1132 0.40 +0.4 1,161,524 + HP15_1132 0.40 +0.2 1,161,571 + HP15_1132 0.44 +0.3 1,161,701 + HP15_1132 0.52 +0.0 1,161,709 - HP15_1132 0.53 -0.1 1,161,788 + HP15_1132 0.58 +0.5 1,161,854 + HP15_1132 0.62 -0.2 1,161,854 + HP15_1132 0.62 +0.8 1,161,929 + HP15_1132 0.67 +0.8 1,161,937 - HP15_1132 0.68 +0.7 1,161,964 + HP15_1132 0.69 +0.7 1,161,982 - HP15_1132 0.71 -0.4 1,162,080 + HP15_1132 0.77 -0.5 1,162,087 + HP15_1132 0.78 -0.4 1,162,205 + HP15_1132 0.85 +1.4 1,162,236 + HP15_1132 0.87 -0.7 1,162,436 + -0.9 1,162,455 + -0.2 1,162,481 - -0.1 1,162,488 + +0.1 1,162,498 + HP15_1133 0.11 +0.7 1,162,498 + HP15_1133 0.11 -0.3 1,162,506 - HP15_1133 0.12 -0.4 1,162,526 + HP15_1133 0.15 -0.0 1,162,526 + HP15_1133 0.15 +0.7 1,162,534 - HP15_1133 0.16 +0.3 1,162,633 - HP15_1133 0.30 +0.8 1,162,646 + HP15_1133 0.32 -0.4 1,162,646 + HP15_1133 0.32 -0.5 1,162,646 + HP15_1133 0.32 -0.7 1,162,654 - HP15_1133 0.33 +0.8 1,162,715 + HP15_1133 0.42 -0.6 1,162,820 + HP15_1133 0.57 -0.6 1,163,006 + HP15_1133 0.83 -0.5 1,163,006 + HP15_1133 0.83 +0.2 1,163,006 + HP15_1133 0.83 +0.8 1,163,014 - HP15_1133 0.84 +1.1 1,163,014 - HP15_1133 0.84 +0.1 1,163,014 - HP15_1133 0.84 -0.6 1,163,014 - HP15_1133 0.84 -1.3 1,163,014 - HP15_1133 0.84 -0.8 1,163,019 - HP15_1133 0.85 +0.2 1,163,085 + -0.9 1,163,104 + +0.3 1,163,152 + +0.2 1,163,192 - +0.6 1,163,236 - -0.0 1,163,236 - +1.0 1,163,236 - +0.8 1,163,304 + -0.4 1,163,307 - +0.9 1,163,356 - +0.6 1,163,364 - -0.6 1,163,366 - +0.8
Or see this region's nucleotide sequence