Strain Fitness in Marinobacter adhaerens HP15 around HP15_1132

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1131 and HP15_1132 are separated by 40 nucleotidesHP15_1132 and HP15_1133 overlap by 4 nucleotidesHP15_1133 and HP15_1134 are separated by 245 nucleotides HP15_1131: HP15_1131 - alpha-L-glutamate ligase-like protein, at 1,159,961 to 1,160,869 _1131 HP15_1132: HP15_1132 - gonadoliberin III-related protein, at 1,160,910 to 1,162,427 _1132 HP15_1133: HP15_1133 - protein containing DUF785, at 1,162,424 to 1,163,122 _1133 HP15_1134: HP15_1134 - conserved hypothetical protein, at 1,163,368 to 1,163,757 _1134 Position (kb) 1160 1161 1162 1163Strain fitness (log2 ratio) -1 0 1at 1160.007 kb on + strandat 1160.007 kb on + strandat 1160.015 kb on - strandat 1160.146 kb on + strand, within HP15_1131at 1160.159 kb on - strand, within HP15_1131at 1160.186 kb on + strand, within HP15_1131at 1160.491 kb on - strand, within HP15_1131at 1160.500 kb on + strand, within HP15_1131at 1160.501 kb on + strand, within HP15_1131at 1160.529 kb on - strand, within HP15_1131at 1160.589 kb on - strand, within HP15_1131at 1160.680 kb on - strand, within HP15_1131at 1160.859 kb on + strandat 1160.975 kb on - strandat 1161.014 kb on - strandat 1161.075 kb on - strand, within HP15_1132at 1161.076 kb on + strand, within HP15_1132at 1161.084 kb on - strand, within HP15_1132at 1161.192 kb on + strand, within HP15_1132at 1161.231 kb on + strand, within HP15_1132at 1161.306 kb on + strand, within HP15_1132at 1161.376 kb on - strand, within HP15_1132at 1161.524 kb on + strand, within HP15_1132at 1161.524 kb on + strand, within HP15_1132at 1161.571 kb on + strand, within HP15_1132at 1161.701 kb on + strand, within HP15_1132at 1161.709 kb on - strand, within HP15_1132at 1161.788 kb on + strand, within HP15_1132at 1161.854 kb on + strand, within HP15_1132at 1161.854 kb on + strand, within HP15_1132at 1161.929 kb on + strand, within HP15_1132at 1161.937 kb on - strand, within HP15_1132at 1161.964 kb on + strand, within HP15_1132at 1161.982 kb on - strand, within HP15_1132at 1162.080 kb on + strand, within HP15_1132at 1162.087 kb on + strand, within HP15_1132at 1162.205 kb on + strand, within HP15_1132at 1162.236 kb on + strand, within HP15_1132at 1162.436 kb on + strandat 1162.455 kb on + strandat 1162.481 kb on - strandat 1162.488 kb on + strandat 1162.498 kb on + strand, within HP15_1133at 1162.498 kb on + strand, within HP15_1133at 1162.506 kb on - strand, within HP15_1133at 1162.526 kb on + strand, within HP15_1133at 1162.526 kb on + strand, within HP15_1133at 1162.534 kb on - strand, within HP15_1133at 1162.633 kb on - strand, within HP15_1133at 1162.646 kb on + strand, within HP15_1133at 1162.646 kb on + strand, within HP15_1133at 1162.646 kb on + strand, within HP15_1133at 1162.654 kb on - strand, within HP15_1133at 1162.715 kb on + strand, within HP15_1133at 1162.820 kb on + strand, within HP15_1133at 1163.006 kb on + strand, within HP15_1133at 1163.006 kb on + strand, within HP15_1133at 1163.006 kb on + strand, within HP15_1133at 1163.014 kb on - strand, within HP15_1133at 1163.014 kb on - strand, within HP15_1133at 1163.014 kb on - strand, within HP15_1133at 1163.014 kb on - strand, within HP15_1133at 1163.014 kb on - strand, within HP15_1133at 1163.019 kb on - strand, within HP15_1133at 1163.085 kb on + strandat 1163.104 kb on + strandat 1163.152 kb on + strandat 1163.192 kb on - strandat 1163.236 kb on - strandat 1163.236 kb on - strandat 1163.236 kb on - strandat 1163.304 kb on + strandat 1163.307 kb on - strandat 1163.356 kb on - strandat 1163.364 kb on - strandat 1163.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,160,007 + +0.8
1,160,007 + -0.1
1,160,015 - -0.2
1,160,146 + HP15_1131 0.20 +0.2
1,160,159 - HP15_1131 0.22 -0.9
1,160,186 + HP15_1131 0.25 +0.9
1,160,491 - HP15_1131 0.58 -0.2
1,160,500 + HP15_1131 0.59 +1.2
1,160,501 + HP15_1131 0.59 +1.1
1,160,529 - HP15_1131 0.62 +0.3
1,160,589 - HP15_1131 0.69 -1.1
1,160,680 - HP15_1131 0.79 -0.2
1,160,859 + -0.0
1,160,975 - -0.2
1,161,014 - -0.3
1,161,075 - HP15_1132 0.11 -0.6
1,161,076 + HP15_1132 0.11 +1.1
1,161,084 - HP15_1132 0.11 +0.3
1,161,192 + HP15_1132 0.19 +0.1
1,161,231 + HP15_1132 0.21 +0.8
1,161,306 + HP15_1132 0.26 +0.6
1,161,376 - HP15_1132 0.31 -0.0
1,161,524 + HP15_1132 0.40 +0.4
1,161,524 + HP15_1132 0.40 +0.2
1,161,571 + HP15_1132 0.44 +0.3
1,161,701 + HP15_1132 0.52 +0.0
1,161,709 - HP15_1132 0.53 -0.1
1,161,788 + HP15_1132 0.58 +0.5
1,161,854 + HP15_1132 0.62 -0.2
1,161,854 + HP15_1132 0.62 +0.8
1,161,929 + HP15_1132 0.67 +0.8
1,161,937 - HP15_1132 0.68 +0.7
1,161,964 + HP15_1132 0.69 +0.7
1,161,982 - HP15_1132 0.71 -0.4
1,162,080 + HP15_1132 0.77 -0.5
1,162,087 + HP15_1132 0.78 -0.4
1,162,205 + HP15_1132 0.85 +1.4
1,162,236 + HP15_1132 0.87 -0.7
1,162,436 + -0.9
1,162,455 + -0.2
1,162,481 - -0.1
1,162,488 + +0.1
1,162,498 + HP15_1133 0.11 +0.7
1,162,498 + HP15_1133 0.11 -0.3
1,162,506 - HP15_1133 0.12 -0.4
1,162,526 + HP15_1133 0.15 -0.0
1,162,526 + HP15_1133 0.15 +0.7
1,162,534 - HP15_1133 0.16 +0.3
1,162,633 - HP15_1133 0.30 +0.8
1,162,646 + HP15_1133 0.32 -0.4
1,162,646 + HP15_1133 0.32 -0.5
1,162,646 + HP15_1133 0.32 -0.7
1,162,654 - HP15_1133 0.33 +0.8
1,162,715 + HP15_1133 0.42 -0.6
1,162,820 + HP15_1133 0.57 -0.6
1,163,006 + HP15_1133 0.83 -0.5
1,163,006 + HP15_1133 0.83 +0.2
1,163,006 + HP15_1133 0.83 +0.8
1,163,014 - HP15_1133 0.84 +1.1
1,163,014 - HP15_1133 0.84 +0.1
1,163,014 - HP15_1133 0.84 -0.6
1,163,014 - HP15_1133 0.84 -1.3
1,163,014 - HP15_1133 0.84 -0.8
1,163,019 - HP15_1133 0.85 +0.2
1,163,085 + -0.9
1,163,104 + +0.3
1,163,152 + +0.2
1,163,192 - +0.6
1,163,236 - -0.0
1,163,236 - +1.0
1,163,236 - +0.8
1,163,304 + -0.4
1,163,307 - +0.9
1,163,356 - +0.6
1,163,364 - -0.6
1,163,366 - +0.8

Or see this region's nucleotide sequence