Experiment: LB, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0608 and Sama_0609 are separated by 2 nucleotides Sama_0609 and Sama_0610 overlap by 4 nucleotides Sama_0610 and Sama_0611 are separated by 363 nucleotides
Sama_0608: Sama_0608 - hypothetical protein (RefSeq), at 761,846 to 762,133
_0608
Sama_0609: Sama_0609 - hypothetical protein (RefSeq), at 762,136 to 762,660
_0609
Sama_0610: Sama_0610 - hypothetical protein (RefSeq), at 762,657 to 763,067
_0610
Sama_0611: Sama_0611 - fumarate reductase flavoprotein subunit precursor (RefSeq), at 763,431 to 765,212
_0611
Position (kb) 762
763
764 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 761.660 kb on - strand at 761.683 kb on + strand at 761.685 kb on + strand at 761.685 kb on + strand at 761.686 kb on - strand at 761.708 kb on + strand at 761.723 kb on - strand at 761.723 kb on - strand at 761.785 kb on + strand at 761.786 kb on - strand at 761.839 kb on - strand at 761.864 kb on + strand at 761.865 kb on - strand at 761.923 kb on - strand, within Sama_0608 at 761.965 kb on + strand, within Sama_0608 at 761.997 kb on + strand, within Sama_0608 at 761.997 kb on + strand, within Sama_0608 at 761.997 kb on + strand, within Sama_0608 at 761.998 kb on - strand, within Sama_0608 at 761.998 kb on - strand, within Sama_0608 at 761.998 kb on - strand, within Sama_0608 at 761.998 kb on - strand, within Sama_0608 at 761.998 kb on - strand, within Sama_0608 at 761.998 kb on - strand, within Sama_0608 at 761.998 kb on - strand, within Sama_0608 at 762.009 kb on - strand, within Sama_0608 at 762.015 kb on + strand, within Sama_0608 at 762.016 kb on - strand, within Sama_0608 at 762.018 kb on + strand, within Sama_0608 at 762.018 kb on + strand, within Sama_0608 at 762.106 kb on + strand at 762.107 kb on - strand at 762.133 kb on + strand at 762.134 kb on - strand at 762.134 kb on - strand at 762.137 kb on + strand at 762.138 kb on - strand at 762.138 kb on - strand at 762.138 kb on - strand at 762.138 kb on - strand at 762.171 kb on + strand at 762.172 kb on - strand at 762.172 kb on - strand at 762.216 kb on - strand, within Sama_0609 at 762.218 kb on + strand, within Sama_0609 at 762.218 kb on + strand, within Sama_0609 at 762.219 kb on - strand, within Sama_0609 at 762.219 kb on - strand, within Sama_0609 at 762.219 kb on - strand, within Sama_0609 at 762.219 kb on - strand, within Sama_0609 at 762.237 kb on + strand, within Sama_0609 at 762.238 kb on - strand, within Sama_0609 at 762.238 kb on - strand, within Sama_0609 at 762.238 kb on - strand, within Sama_0609 at 762.298 kb on - strand, within Sama_0609 at 762.326 kb on + strand, within Sama_0609 at 762.327 kb on - strand, within Sama_0609 at 762.346 kb on + strand, within Sama_0609 at 762.346 kb on + strand, within Sama_0609 at 762.347 kb on - strand, within Sama_0609 at 762.347 kb on - strand, within Sama_0609 at 762.347 kb on - strand, within Sama_0609 at 762.347 kb on - strand, within Sama_0609 at 762.370 kb on + strand, within Sama_0609 at 762.370 kb on + strand, within Sama_0609 at 762.370 kb on + strand, within Sama_0609 at 762.370 kb on + strand, within Sama_0609 at 762.370 kb on + strand, within Sama_0609 at 762.371 kb on - strand, within Sama_0609 at 762.389 kb on + strand, within Sama_0609 at 762.390 kb on - strand, within Sama_0609 at 762.403 kb on + strand, within Sama_0609 at 762.403 kb on + strand, within Sama_0609 at 762.404 kb on - strand, within Sama_0609 at 762.404 kb on - strand, within Sama_0609 at 762.404 kb on - strand, within Sama_0609 at 762.432 kb on + strand, within Sama_0609 at 762.432 kb on + strand, within Sama_0609 at 762.433 kb on - strand, within Sama_0609 at 762.484 kb on + strand, within Sama_0609 at 762.484 kb on + strand, within Sama_0609 at 762.561 kb on + strand, within Sama_0609 at 762.580 kb on + strand, within Sama_0609 at 762.580 kb on + strand, within Sama_0609 at 762.581 kb on - strand, within Sama_0609 at 762.581 kb on - strand, within Sama_0609 at 762.627 kb on - strand at 762.684 kb on + strand at 762.685 kb on - strand at 762.709 kb on + strand, within Sama_0610 at 762.738 kb on + strand, within Sama_0610 at 762.739 kb on - strand, within Sama_0610 at 762.801 kb on - strand, within Sama_0610 at 762.820 kb on - strand, within Sama_0610 at 762.846 kb on - strand, within Sama_0610 at 762.846 kb on - strand, within Sama_0610 at 762.846 kb on - strand, within Sama_0610 at 762.855 kb on - strand, within Sama_0610 at 762.990 kb on + strand, within Sama_0610 at 762.991 kb on - strand, within Sama_0610 at 763.016 kb on + strand, within Sama_0610 at 763.016 kb on + strand, within Sama_0610 at 763.016 kb on + strand, within Sama_0610 at 763.017 kb on - strand, within Sama_0610 at 763.020 kb on + strand, within Sama_0610 at 763.020 kb on + strand, within Sama_0610 at 763.021 kb on - strand, within Sama_0610 at 763.021 kb on - strand, within Sama_0610 at 763.059 kb on - strand at 763.090 kb on + strand at 763.090 kb on + strand at 763.090 kb on + strand at 763.090 kb on + strand at 763.091 kb on - strand at 763.091 kb on - strand at 763.101 kb on + strand at 763.101 kb on + strand at 763.102 kb on - strand at 763.102 kb on - strand at 763.136 kb on + strand at 763.139 kb on - strand at 763.163 kb on + strand at 763.164 kb on - strand at 763.294 kb on + strand at 763.294 kb on + strand at 763.295 kb on - strand at 763.295 kb on - strand at 763.295 kb on - strand at 763.300 kb on - strand at 763.306 kb on + strand at 763.314 kb on + strand at 763.319 kb on - strand at 763.324 kb on + strand at 763.325 kb on - strand at 763.327 kb on + strand at 763.359 kb on + strand at 763.359 kb on + strand at 763.360 kb on - strand at 763.368 kb on + strand at 763.368 kb on + strand at 763.372 kb on + strand at 763.373 kb on - strand at 763.373 kb on - strand at 763.406 kb on + strand at 763.407 kb on - strand at 763.407 kb on - strand at 763.430 kb on + strand at 763.430 kb on + strand at 763.430 kb on + strand at 763.430 kb on + strand at 763.430 kb on + strand at 763.430 kb on + strand at 763.430 kb on + strand at 763.430 kb on + strand at 763.430 kb on + strand at 763.430 kb on + strand at 763.430 kb on + strand at 763.431 kb on - strand at 763.431 kb on - strand at 763.431 kb on - strand at 763.431 kb on - strand at 763.569 kb on - strand at 763.586 kb on + strand at 763.586 kb on + strand at 763.634 kb on + strand, within Sama_0611 at 763.634 kb on + strand, within Sama_0611 at 763.634 kb on + strand, within Sama_0611 at 763.635 kb on - strand, within Sama_0611 at 763.643 kb on - strand, within Sama_0611 at 763.666 kb on + strand, within Sama_0611 at 763.666 kb on + strand, within Sama_0611 at 763.666 kb on + strand, within Sama_0611 at 763.666 kb on + strand, within Sama_0611 at 763.666 kb on + strand, within Sama_0611 at 763.666 kb on + strand, within Sama_0611 at 763.666 kb on + strand, within Sama_0611 at 763.667 kb on - strand, within Sama_0611 at 763.667 kb on - strand, within Sama_0611 at 763.679 kb on + strand, within Sama_0611 at 763.680 kb on - strand, within Sama_0611 at 763.680 kb on - strand, within Sama_0611 at 763.680 kb on - strand, within Sama_0611 at 763.693 kb on + strand, within Sama_0611 at 763.693 kb on + strand, within Sama_0611 at 763.694 kb on - strand, within Sama_0611 at 763.700 kb on + strand, within Sama_0611 at 763.700 kb on + strand, within Sama_0611 at 763.701 kb on - strand, within Sama_0611 at 763.710 kb on - strand, within Sama_0611 at 763.710 kb on - strand, within Sama_0611 at 763.742 kb on + strand, within Sama_0611 at 763.743 kb on - strand, within Sama_0611 at 763.743 kb on - strand, within Sama_0611 at 763.746 kb on + strand, within Sama_0611 at 763.746 kb on + strand, within Sama_0611 at 763.746 kb on + strand, within Sama_0611 at 763.746 kb on + strand, within Sama_0611 at 763.746 kb on + strand, within Sama_0611 at 763.747 kb on - strand, within Sama_0611 at 763.747 kb on - strand, within Sama_0611 at 763.763 kb on + strand, within Sama_0611 at 763.891 kb on + strand, within Sama_0611 at 763.891 kb on + strand, within Sama_0611 at 763.891 kb on + strand, within Sama_0611 at 763.891 kb on + strand, within Sama_0611 at 763.891 kb on + strand, within Sama_0611 at 763.891 kb on + strand, within Sama_0611 at 763.891 kb on + strand, within Sama_0611 at 763.891 kb on + strand, within Sama_0611 at 763.892 kb on - strand, within Sama_0611 at 763.892 kb on - strand, within Sama_0611 at 763.985 kb on + strand, within Sama_0611 at 763.985 kb on + strand, within Sama_0611 at 763.986 kb on - strand, within Sama_0611 at 763.988 kb on + strand, within Sama_0611 at 763.988 kb on + strand, within Sama_0611 at 763.988 kb on + strand, within Sama_0611 at 763.988 kb on + strand, within Sama_0611 at 763.988 kb on + strand, within Sama_0611 at 763.988 kb on + strand, within Sama_0611 at 763.989 kb on - strand, within Sama_0611 at 764.009 kb on + strand, within Sama_0611 at 764.010 kb on - strand, within Sama_0611 at 764.048 kb on + strand, within Sama_0611 at 764.057 kb on + strand, within Sama_0611 at 764.057 kb on + strand, within Sama_0611 at 764.058 kb on - strand, within Sama_0611 at 764.058 kb on - strand, within Sama_0611
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 30C remove 761,660 - -0.4 761,683 + -0.7 761,685 + +0.7 761,685 + +0.7 761,686 - +0.2 761,708 + +0.9 761,723 - -0.3 761,723 - +1.0 761,785 + +0.0 761,786 - -0.1 761,839 - +0.4 761,864 + +0.1 761,865 - +1.6 761,923 - Sama_0608 0.27 -1.9 761,965 + Sama_0608 0.41 -1.1 761,997 + Sama_0608 0.52 -0.1 761,997 + Sama_0608 0.52 +0.7 761,997 + Sama_0608 0.52 +0.4 761,998 - Sama_0608 0.53 +1.4 761,998 - Sama_0608 0.53 +0.9 761,998 - Sama_0608 0.53 -1.0 761,998 - Sama_0608 0.53 +1.1 761,998 - Sama_0608 0.53 +0.9 761,998 - Sama_0608 0.53 -0.7 761,998 - Sama_0608 0.53 -0.5 762,009 - Sama_0608 0.57 +0.0 762,015 + Sama_0608 0.59 -0.2 762,016 - Sama_0608 0.59 +0.4 762,018 + Sama_0608 0.60 +0.4 762,018 + Sama_0608 0.60 -0.9 762,106 + -0.4 762,107 - -0.6 762,133 + -0.4 762,134 - -0.4 762,134 - +0.8 762,137 + -0.7 762,138 - -0.1 762,138 - +0.0 762,138 - +2.6 762,138 - +0.7 762,171 + -1.5 762,172 - -0.1 762,172 - +0.9 762,216 - Sama_0609 0.15 -0.4 762,218 + Sama_0609 0.16 -0.7 762,218 + Sama_0609 0.16 -0.7 762,219 - Sama_0609 0.16 -1.0 762,219 - Sama_0609 0.16 -0.5 762,219 - Sama_0609 0.16 -0.4 762,219 - Sama_0609 0.16 +0.9 762,237 + Sama_0609 0.19 +1.3 762,238 - Sama_0609 0.19 +0.3 762,238 - Sama_0609 0.19 +0.5 762,238 - Sama_0609 0.19 -0.1 762,298 - Sama_0609 0.31 -0.7 762,326 + Sama_0609 0.36 +0.4 762,327 - Sama_0609 0.36 +0.9 762,346 + Sama_0609 0.40 -0.1 762,346 + Sama_0609 0.40 -0.1 762,347 - Sama_0609 0.40 +2.0 762,347 - Sama_0609 0.40 -0.1 762,347 - Sama_0609 0.40 +0.5 762,347 - Sama_0609 0.40 +0.0 762,370 + Sama_0609 0.45 +0.0 762,370 + Sama_0609 0.45 -1.1 762,370 + Sama_0609 0.45 +1.6 762,370 + Sama_0609 0.45 +0.0 762,370 + Sama_0609 0.45 -0.4 762,371 - Sama_0609 0.45 -0.3 762,389 + Sama_0609 0.48 +0.4 762,390 - Sama_0609 0.48 -1.2 762,403 + Sama_0609 0.51 -0.6 762,403 + Sama_0609 0.51 -0.5 762,404 - Sama_0609 0.51 +0.8 762,404 - Sama_0609 0.51 -0.5 762,404 - Sama_0609 0.51 -0.8 762,432 + Sama_0609 0.56 -0.7 762,432 + Sama_0609 0.56 -0.4 762,433 - Sama_0609 0.57 -0.2 762,484 + Sama_0609 0.66 -1.0 762,484 + Sama_0609 0.66 -0.7 762,561 + Sama_0609 0.81 -0.5 762,580 + Sama_0609 0.85 -1.3 762,580 + Sama_0609 0.85 -0.7 762,581 - Sama_0609 0.85 -0.6 762,581 - Sama_0609 0.85 -0.1 762,627 - +0.5 762,684 + -0.5 762,685 - -0.1 762,709 + Sama_0610 0.13 +0.0 762,738 + Sama_0610 0.20 -0.8 762,739 - Sama_0610 0.20 -1.1 762,801 - Sama_0610 0.35 -0.6 762,820 - Sama_0610 0.40 +1.6 762,846 - Sama_0610 0.46 -0.4 762,846 - Sama_0610 0.46 -0.1 762,846 - Sama_0610 0.46 -1.6 762,855 - Sama_0610 0.48 +0.5 762,990 + Sama_0610 0.81 -0.4 762,991 - Sama_0610 0.81 -0.3 763,016 + Sama_0610 0.87 -0.1 763,016 + Sama_0610 0.87 +0.6 763,016 + Sama_0610 0.87 -0.2 763,017 - Sama_0610 0.88 -0.3 763,020 + Sama_0610 0.88 +0.5 763,020 + Sama_0610 0.88 -1.5 763,021 - Sama_0610 0.89 -1.7 763,021 - Sama_0610 0.89 -1.1 763,059 - -0.7 763,090 + -0.6 763,090 + -0.9 763,090 + -0.3 763,090 + +0.4 763,091 - -0.8 763,091 - -0.7 763,101 + +0.5 763,101 + +0.4 763,102 - +0.3 763,102 - -1.3 763,136 + +0.1 763,139 - +1.3 763,163 + -0.4 763,164 - -0.8 763,294 + +0.8 763,294 + +0.5 763,295 - -0.3 763,295 - -0.2 763,295 - -2.2 763,300 - -0.1 763,306 + -0.6 763,314 + +0.7 763,319 - +0.2 763,324 + +1.3 763,325 - +0.2 763,327 + -0.1 763,359 + +1.3 763,359 + -1.5 763,360 - -1.5 763,368 + -0.7 763,368 + +0.4 763,372 + +0.7 763,373 - +0.6 763,373 - -0.5 763,406 + -0.6 763,407 - -1.2 763,407 - +0.0 763,430 + +0.5 763,430 + +1.6 763,430 + +0.7 763,430 + +2.0 763,430 + -0.2 763,430 + +0.6 763,430 + +0.1 763,430 + -0.2 763,430 + -0.1 763,430 + +0.2 763,430 + -0.8 763,431 - +0.8 763,431 - -0.7 763,431 - -0.2 763,431 - -0.1 763,569 - -0.5 763,586 + -0.5 763,586 + -0.5 763,634 + Sama_0611 0.11 -0.8 763,634 + Sama_0611 0.11 -1.0 763,634 + Sama_0611 0.11 +0.5 763,635 - Sama_0611 0.11 -2.5 763,643 - Sama_0611 0.12 -0.1 763,666 + Sama_0611 0.13 -0.1 763,666 + Sama_0611 0.13 +3.4 763,666 + Sama_0611 0.13 +0.1 763,666 + Sama_0611 0.13 +0.2 763,666 + Sama_0611 0.13 +0.1 763,666 + Sama_0611 0.13 -1.0 763,666 + Sama_0611 0.13 -0.1 763,667 - Sama_0611 0.13 -1.5 763,667 - Sama_0611 0.13 -0.0 763,679 + Sama_0611 0.14 -0.9 763,680 - Sama_0611 0.14 +0.2 763,680 - Sama_0611 0.14 -1.2 763,680 - Sama_0611 0.14 +0.4 763,693 + Sama_0611 0.15 +0.3 763,693 + Sama_0611 0.15 -0.4 763,694 - Sama_0611 0.15 -1.3 763,700 + Sama_0611 0.15 -1.5 763,700 + Sama_0611 0.15 -0.1 763,701 - Sama_0611 0.15 +0.9 763,710 - Sama_0611 0.16 +1.0 763,710 - Sama_0611 0.16 +1.0 763,742 + Sama_0611 0.17 -0.9 763,743 - Sama_0611 0.18 +1.3 763,743 - Sama_0611 0.18 -0.2 763,746 + Sama_0611 0.18 -1.5 763,746 + Sama_0611 0.18 -0.0 763,746 + Sama_0611 0.18 -0.3 763,746 + Sama_0611 0.18 +0.6 763,746 + Sama_0611 0.18 +0.9 763,747 - Sama_0611 0.18 +0.2 763,747 - Sama_0611 0.18 +0.4 763,763 + Sama_0611 0.19 -0.3 763,891 + Sama_0611 0.26 -0.9 763,891 + Sama_0611 0.26 -0.4 763,891 + Sama_0611 0.26 -0.6 763,891 + Sama_0611 0.26 +0.3 763,891 + Sama_0611 0.26 -0.2 763,891 + Sama_0611 0.26 -1.6 763,891 + Sama_0611 0.26 -0.1 763,891 + Sama_0611 0.26 -0.3 763,892 - Sama_0611 0.26 -1.9 763,892 - Sama_0611 0.26 -0.7 763,985 + Sama_0611 0.31 -0.2 763,985 + Sama_0611 0.31 -1.7 763,986 - Sama_0611 0.31 -0.0 763,988 + Sama_0611 0.31 +2.6 763,988 + Sama_0611 0.31 -0.7 763,988 + Sama_0611 0.31 +0.5 763,988 + Sama_0611 0.31 +0.6 763,988 + Sama_0611 0.31 +0.5 763,988 + Sama_0611 0.31 +0.7 763,989 - Sama_0611 0.31 -1.0 764,009 + Sama_0611 0.32 +0.5 764,010 - Sama_0611 0.32 -0.7 764,048 + Sama_0611 0.35 -1.4 764,057 + Sama_0611 0.35 +0.4 764,057 + Sama_0611 0.35 -1.0 764,058 - Sama_0611 0.35 +0.0 764,058 - Sama_0611 0.35 -0.8
Or see this region's nucleotide sequence