Strain Fitness in Shewanella oneidensis MR-1 around SO4085

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
4,237,545	-		SO4081	0.79	-0.6
4,237,545	-		SO4081	0.79	+0.8
4,237,592	+		SO4081	0.82	+1.0
4,237,592	+		SO4081	0.82	+0.9
4,237,592	+		SO4081	0.82	+0.8
4,237,592	+		SO4081	0.82	+1.2
4,237,592	+		SO4081	0.82	-0.7
4,237,592	+		SO4081	0.82	-0.9
4,237,592	+		SO4081	0.82	+0.3
4,237,592	+		SO4081	0.82	-2.8
4,237,600	-		SO4081	0.83	-1.9
4,237,600	-		SO4081	0.83	-0.1
4,237,600	-		SO4081	0.83	-1.2
4,237,600	-		SO4081	0.83	+1.1
4,237,678	+		SO4081	0.89	-1.2
4,237,786	+				-1.0
4,237,794	-				-2.8
4,237,794	-				+0.4
4,237,794	-				+0.4
4,237,794	-				+0.6
4,237,794	-				-0.0
4,237,821	+				+0.2
4,237,906	-				+1.0
4,237,926	+				-0.5
4,237,934	-				+0.7
4,237,936	+				+0.4
4,238,109	+				-0.3
4,238,117	-				+0.4
4,238,117	-				-3.0
4,238,150	-				-1.9
4,238,474	+				-1.8
4,238,482	+				-0.9
4,238,487	+				+1.2
4,238,490	-				-2.3
4,238,492	+				-1.1
4,238,500	-				+0.6
4,238,502	+				+1.5
4,238,502	+				+2.2
4,238,502	+				-0.5
4,238,530	+				-1.5
4,238,538	-				+0.4
4,238,546	+				+0.5
4,238,582	+				-2.0
4,238,651	+				-0.2
4,238,689	-				+0.7
4,238,689	-				+0.7
4,238,722	+				-1.2
4,238,741	-				+0.4
4,238,801	-	chiA	SO4085	0.13	-0.2
4,238,820	-	chiA	SO4085	0.13	+0.4
4,238,901	-	chiA	SO4085	0.17	+0.3
4,238,928	+	chiA	SO4085	0.19	-0.6
4,238,977	+	chiA	SO4085	0.21	+0.6
4,239,030	+	chiA	SO4085	0.23	-0.6
4,239,044	+	chiA	SO4085	0.24	+0.3
4,239,116	-	chiA	SO4085	0.28	-0.1
4,239,162	-	chiA	SO4085	0.30	-0.6
4,239,222	+	chiA	SO4085	0.33	+2.6
4,239,224	+	chiA	SO4085	0.33	-2.5
4,239,264	-	chiA	SO4085	0.35	-0.6
4,239,391	-	chiA	SO4085	0.41	+1.2
4,239,411	-	chiA	SO4085	0.42	-2.6
4,239,434	+	chiA	SO4085	0.43	+1.0
4,239,434	+	chiA	SO4085	0.43	-1.2
4,239,434	+	chiA	SO4085	0.43	-0.1
4,239,444	-	chiA	SO4085	0.43	-0.7
4,239,566	+	chiA	SO4085	0.49	-0.8
4,239,566	+	chiA	SO4085	0.49	-0.4
4,239,573	+	chiA	SO4085	0.49	-0.7
4,239,574	-	chiA	SO4085	0.49	+1.4
4,239,591	-	chiA	SO4085	0.50	-0.5
4,239,644	+	chiA	SO4085	0.53	-0.8
4,239,714	+	chiA	SO4085	0.56	-0.3
4,239,722	-	chiA	SO4085	0.56	+0.5
4,239,737	+	chiA	SO4085	0.57	-2.9
4,239,743	-	chiA	SO4085	0.57	-2.3
4,239,745	-	chiA	SO4085	0.57	-0.1
4,239,765	-	chiA	SO4085	0.58	+1.5
4,239,949	-	chiA	SO4085	0.67	-1.4
4,239,956	+	chiA	SO4085	0.68	-1.7
4,240,045	-	chiA	SO4085	0.72	-1.2
4,240,129	-	chiA	SO4085	0.76	-1.4
4,240,182	-	chiA	SO4085	0.78	+1.0
4,240,270	+	chiA	SO4085	0.82	-1.2
4,240,285	-	chiA	SO4085	0.83	+0.0
4,240,415	+	chiA	SO4085	0.89	-0.2
4,240,417	+	chiA	SO4085	0.89	-1.8
4,240,423	-	chiA	SO4085	0.90	+1.3
4,240,423	-	chiA	SO4085	0.90	-2.2
4,240,423	-	chiA	SO4085	0.90	-1.1
4,240,552	-				+0.1
4,240,631	+				-1.1
4,240,643	+				-1.3
4,240,796	+				-0.4
4,240,801	+				-1.2
4,240,801	+				+0.5
4,240,826	-				-2.6
4,240,982	-		SO4087	0.16	-1.5
4,241,174	+		SO4087	0.33	+0.6
4,241,182	-		SO4087	0.34	-1.3
4,241,182	-		SO4087	0.34	+0.3
4,241,209	-		SO4087	0.36	-0.2
4,241,276	+		SO4087	0.42	+0.1
4,241,380	-		SO4087	0.51	-2.7
4,241,543	+		SO4087	0.66	-1.5