Strain Fitness in Shewanella oneidensis MR-1 around SO4043

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
4,195,843	-				-1.7
4,195,853	-				-0.4
4,195,897	+				+0.1
4,195,932	-		SO4042	0.14	+0.8
4,196,003	-		SO4042	0.22	+0.1
4,196,025	+		SO4042	0.25	-1.0
4,196,033	-		SO4042	0.26	+0.6
4,196,127	-		SO4042	0.37	-2.1
4,196,127	-		SO4042	0.37	+0.3
4,196,127	-		SO4042	0.37	-0.4
4,196,130	+		SO4042	0.38	-2.1
4,196,143	-		SO4042	0.39	-0.0
4,196,189	+		SO4042	0.45	+0.4
4,196,234	+		SO4042	0.50	+0.9
4,196,234	+		SO4042	0.50	+0.1
4,196,234	+		SO4042	0.50	-1.3
4,196,234	+		SO4042	0.50	+0.6
4,196,234	+		SO4042	0.50	-0.8
4,196,234	+		SO4042	0.50	-1.1
4,196,242	-		SO4042	0.51	-0.5
4,196,242	-		SO4042	0.51	+0.5
4,196,242	-		SO4042	0.51	-1.8
4,196,242	-		SO4042	0.51	-1.7
4,196,242	-		SO4042	0.51	-1.3
4,196,242	-		SO4042	0.51	-1.0
4,196,242	-		SO4042	0.51	-1.1
4,196,242	-		SO4042	0.51	+0.3
4,196,242	-		SO4042	0.51	+0.7
4,196,242	-		SO4042	0.51	-1.5
4,196,244	+		SO4042	0.52	+0.2
4,196,252	-		SO4042	0.52	-1.3
4,196,252	-		SO4042	0.52	+0.5
4,196,324	-		SO4042	0.61	-0.6
4,196,338	-		SO4042	0.63	-1.9
4,196,338	-		SO4042	0.63	+2.2
4,196,343	-		SO4042	0.64	-1.7
4,196,348	-		SO4042	0.64	+0.8
4,196,348	-		SO4042	0.64	+1.5
4,196,348	-		SO4042	0.64	+0.8
4,196,460	+		SO4042	0.78	-0.1
4,196,468	-		SO4042	0.79	+0.8
4,196,506	+		SO4042	0.83	+0.1
4,196,506	+		SO4042	0.83	+0.2
4,196,509	-		SO4042	0.84	-0.2
4,196,538	+		SO4042	0.87	-1.3
4,196,568	+				-2.5
4,196,713	-				+0.1
4,196,749	-				-0.4
4,196,761	+				+0.8
4,196,769	-				+0.4
4,196,769	-				-1.3
4,196,824	+				+0.1
4,196,833	+				-0.5
4,196,868	-				+2.2
4,196,903	+				-2.1
4,196,929	-		SO4043	0.11	+0.1
4,197,033	-		SO4043	0.21	-0.8
4,197,043	-		SO4043	0.22	-1.4
4,197,049	-		SO4043	0.22	-1.4
4,197,191	+		SO4043	0.35	+0.2
4,197,199	-		SO4043	0.36	-1.7
4,197,331	-		SO4043	0.48	+1.0
4,197,336	-		SO4043	0.48	-2.4
4,197,346	-		SO4043	0.49	-1.0
4,197,346	-		SO4043	0.49	-1.2
4,197,502	-		SO4043	0.63	+0.3
4,197,563	+		SO4043	0.68	-2.1
4,197,563	+		SO4043	0.68	-0.2
4,197,690	+		SO4043	0.80	-1.1
4,197,698	-		SO4043	0.81	-2.3
4,197,834	+				+0.6
4,197,882	-				-0.3
4,197,916	+				+0.0
4,197,965	+		SO4044	0.11	+0.2
4,198,045	-		SO4044	0.30	+0.7
4,198,079	+		SO4044	0.38	+0.1
4,198,087	-		SO4044	0.40	+1.6
4,198,101	+		SO4044	0.43	+0.3
4,198,101	+		SO4044	0.43	-0.2
4,198,154	+		SO4044	0.56	-1.7
4,198,175	-		SO4044	0.61	+0.4
4,198,175	-		SO4044	0.61	-1.6
4,198,230	+		SO4044	0.74	-1.2
4,198,266	-		SO4044	0.82	+0.4
4,198,279	+		SO4044	0.85	-0.3
4,198,279	+		SO4044	0.85	-1.8
4,198,287	-		SO4044	0.87	-1.1
4,198,351	-				-1.7
4,198,351	-				-0.3
4,198,367	+				+0.1
4,198,367	+				+0.7
4,198,367	+				-0.8
4,198,419	-				-0.1
4,198,431	+				+0.7
4,198,658	-				-1.2
4,198,754	+				-1.5
4,198,799	+				-2.4
4,198,805	+				-1.8