Strain Fitness in Shewanella oneidensis MR-1 around SO4025

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
4,177,289	+				-0.3
4,177,333	-				+0.1
4,177,341	+				+1.0
4,177,361	+				-1.3
4,177,419	+				-0.4
4,177,499	+				-0.2
4,177,540	+				-1.8
4,177,548	-				-1.1
4,177,623	+				+0.2
4,177,631	-				-2.0
4,177,678	+				-1.8
4,177,680	+				+0.1
4,177,890	-		SO4025	0.14	+0.9
4,177,892	+		SO4025	0.14	-1.6
4,178,002	+		SO4025	0.17	-0.4
4,178,010	-		SO4025	0.17	-1.5
4,178,010	-		SO4025	0.17	+0.9
4,178,010	-		SO4025	0.17	-0.1
4,178,010	-		SO4025	0.17	+0.3
4,178,035	+		SO4025	0.17	-1.1
4,178,068	-		SO4025	0.18	-0.3
4,178,217	+		SO4025	0.22	-1.4
4,178,217	+		SO4025	0.22	+0.3
4,178,225	-		SO4025	0.22	+1.6
4,178,293	+		SO4025	0.23	-0.4
4,178,351	+		SO4025	0.25	+0.9
4,178,414	+		SO4025	0.26	-1.3
4,178,792	-		SO4025	0.35	+0.4
4,178,860	-		SO4025	0.36	-1.9
4,178,932	+		SO4025	0.38	+1.6
4,178,934	-		SO4025	0.38	+0.1
4,178,940	-		SO4025	0.38	+0.3
4,178,974	-		SO4025	0.39	-0.7
4,179,236	+		SO4025	0.44	-1.1
4,179,258	+		SO4025	0.45	-1.9
4,179,258	+		SO4025	0.45	-0.1
4,179,360	+		SO4025	0.47	+0.4
4,179,623	-		SO4025	0.53	-1.8
4,179,627	+		SO4025	0.53	-0.8
4,179,635	-		SO4025	0.53	-0.4
4,179,668	+		SO4025	0.54	-1.7
4,179,742	+		SO4025	0.56	-1.8
4,179,769	-		SO4025	0.56	-0.0
4,179,769	-		SO4025	0.56	-1.2
4,179,831	+		SO4025	0.58	-1.0
4,179,833	+		SO4025	0.58	-2.0
4,179,833	+		SO4025	0.58	-0.9
4,179,833	+		SO4025	0.58	+0.2
4,179,841	-		SO4025	0.58	+0.6
4,179,841	-		SO4025	0.58	+0.8
4,179,922	-		SO4025	0.60	-0.9
4,180,052	-		SO4025	0.63	+1.0
4,180,113	+		SO4025	0.64	-2.3
4,180,208	+		SO4025	0.66	-2.2
4,180,253	-		SO4025	0.67	-0.9
4,180,362	+		SO4025	0.70	-1.5
4,180,553	-		SO4025	0.74	-0.1
4,180,554	+		SO4025	0.74	+0.6
4,180,678	+		SO4025	0.77	-1.4
4,180,736	+		SO4025	0.78	+0.8
4,180,804	-		SO4025	0.80	+0.0
4,180,817	-		SO4025	0.80	-2.5
4,180,830	+		SO4025	0.80	+0.1
4,180,941	+		SO4025	0.83	+1.0
4,180,949	-		SO4025	0.83	+1.1
4,180,949	-		SO4025	0.83	+0.4
4,181,248	+		SO4025	0.90	+0.0
4,181,302	+				+0.1
4,181,310	-				-2.0
4,181,351	+				+1.4
4,181,390	-				-1.2
4,181,465	-				+0.2
4,181,465	-				+0.1
4,181,465	-				-1.0
4,181,465	-				+0.1
4,181,465	-				+0.0
4,181,465	-				+0.6
4,181,465	-				-1.1
4,181,498	+				+0.7
4,181,532	-				-0.9
4,181,534	+				+0.1
4,181,588	+				+0.2
4,181,611	+				-1.7
4,181,611	+				+0.1
4,181,625	+				+0.8
4,181,625	+				-0.9
4,181,625	+				-1.6
4,181,633	-				-0.2
4,181,633	-				+0.6
4,181,633	-				-1.3
4,181,633	-				-0.6
4,181,633	-				+0.8
4,181,633	-				-0.4
4,181,633	-				-2.4
4,181,633	-				+0.0
4,181,722	-				-0.0
4,181,722	-				+0.9
4,181,760	+				+0.1
4,181,760	+				-0.2
4,181,760	+				+1.6
4,181,760	+				+0.0
4,181,768	-		SO4026	0.10	-2.1
4,181,768	-		SO4026	0.10	-1.1
4,181,768	-		SO4026	0.10	-1.8
4,181,770	+		SO4026	0.12	-0.4
4,181,770	+		SO4026	0.12	-0.9
4,181,770	+		SO4026	0.12	+0.4
4,181,778	-		SO4026	0.17	-1.0
4,181,778	-		SO4026	0.17	-1.5
4,181,778	-		SO4026	0.17	+1.1
4,181,778	-		SO4026	0.17	-0.9
4,181,787	+		SO4026	0.22	-1.5
4,181,825	+		SO4026	0.46	-2.2
4,181,829	+		SO4026	0.48	-1.0
4,181,924	+				+0.8
4,181,929	-				-0.7
4,182,091	+		SO4027	0.49	+1.9
4,182,101	+		SO4027	0.51	-0.1
4,182,106	+		SO4027	0.52	-0.4
4,182,120	-		SO4027	0.56	-0.0
4,182,120	-		SO4027	0.56	-0.3
4,182,211	-		SO4027	0.78	+0.3
4,182,216	+		SO4027	0.80	+0.3
4,182,216	+		SO4027	0.80	-1.4
4,182,224	-		SO4027	0.81	+0.5
4,182,224	-		SO4027	0.81	+0.1
4,182,224	-		SO4027	0.81	-1.5
4,182,224	-		SO4027	0.81	-0.2
4,182,224	-		SO4027	0.81	-0.6
4,182,224	-		SO4027	0.81	-0.3
4,182,224	-		SO4027	0.81	-0.1
4,182,224	-		SO4027	0.81	+0.6
4,182,379	+				-1.9