Strain Fitness in Shewanella oneidensis MR-1 around SO3854

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
3,998,540	+		SO3851	0.44	-0.6
3,998,648	-				+0.3
3,998,711	-				+0.1
3,998,867	-		SO3852	0.32	+0.5
3,998,867	-		SO3852	0.32	+0.5
3,998,937	-		SO3852	0.47	-0.8
3,998,971	-		SO3852	0.55	+0.3
3,999,036	+		SO3852	0.69	+0.4
3,999,076	-		SO3852	0.77	-1.2
3,999,115	+		SO3852	0.86	-1.9
3,999,124	-		SO3852	0.88	-1.6
3,999,149	-				-1.7
3,999,176	+				-1.7
3,999,176	+				-0.9
3,999,176	+				+0.9
3,999,184	-				+1.2
3,999,184	-				-0.2
3,999,184	-				+0.3
3,999,184	-				+0.2
3,999,196	+				-1.4
3,999,271	+				+0.1
3,999,320	+		SO3853	0.12	-1.2
3,999,511	-				+0.3
3,999,760	+		SO3854	0.26	-1.1
3,999,769	-		SO3854	0.27	+0.1
3,999,769	-		SO3854	0.27	-2.0
3,999,803	-		SO3854	0.30	-1.2
3,999,803	-		SO3854	0.30	-2.3
3,999,863	+		SO3854	0.37	-1.0
3,999,865	+		SO3854	0.37	-0.6
3,999,865	+		SO3854	0.37	+0.1
3,999,871	-		SO3854	0.38	-0.6
3,999,871	-		SO3854	0.38	-0.2
3,999,885	-		SO3854	0.39	-2.7
3,999,921	-		SO3854	0.43	+0.7
4,000,234	-		SO3854	0.77	-0.9
4,000,326	+		SO3854	0.87	+0.1
4,000,411	+				-0.6
4,000,411	+				+0.8
4,000,411	+				-1.0
4,000,420	-				+0.3
4,000,430	-				+0.3
4,000,460	+				+0.7
4,000,551	+				-0.5
4,000,730	+				+0.3
4,000,749	-				-0.3
4,000,776	-				+0.1
4,000,781	-				+0.1
4,000,908	+				-0.1
4,000,924	-				-3.3
4,000,946	+				+1.0
4,000,965	-	sfcA	SO3855	0.10	+1.6
4,001,022	-	sfcA	SO3855	0.14	-1.1
4,001,045	-	sfcA	SO3855	0.15	-0.3
4,001,100	-	sfcA	SO3855	0.18	+0.4
4,001,138	+	sfcA	SO3855	0.21	-1.6
4,001,153	+	sfcA	SO3855	0.22	+0.3
4,001,325	+	sfcA	SO3855	0.32	-1.0
4,001,330	+	sfcA	SO3855	0.32	+0.6
4,001,333	-	sfcA	SO3855	0.32	+0.6
4,001,359	+	sfcA	SO3855	0.34	-0.7
4,001,359	+	sfcA	SO3855	0.34	+2.0