Strain Fitness in Shewanella oneidensis MR-1 around SO3520

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
3,674,224	-	glnB-2	SO3519	0.26	-1.3
3,674,316	+	glnB-2	SO3519	0.53	+0.7
3,674,341	+	glnB-2	SO3519	0.61	-3.2
3,674,344	-	glnB-2	SO3519	0.62	-2.3
3,674,363	+	glnB-2	SO3519	0.67	-1.0
3,674,395	-	glnB-2	SO3519	0.77	+0.4
3,674,509	+				-0.2
3,674,517	+				-0.7
3,674,517	+				-0.1
3,674,517	+				-1.0
3,674,525	-				-0.5
3,674,531	-				+0.6
3,674,533	+				-0.7
3,674,533	+				+0.4
3,674,541	-				-1.4
3,674,679	-				+1.1
3,674,679	-				-1.4
3,674,679	-				+0.1
3,674,690	+				-0.1
3,674,704	+				-2.6
3,674,707	-				-0.1
3,674,723	+				-1.6
3,674,731	-				-1.2
3,674,731	-				+1.9
3,674,733	-				+1.3
3,674,738	+				-0.2
3,674,738	+				+0.4
3,674,738	+				-0.4
3,674,744	+				-1.6
3,674,746	-				-1.3
3,674,746	-				-0.8
3,674,752	-				-2.4
3,674,752	-				-0.1
3,674,752	-				+1.1
3,674,757	+				-0.9
3,674,757	+				+1.4
3,674,759	+				+0.7
3,674,764	+				-1.8
3,674,765	-				-0.1
3,674,785	-		SO3520	0.13	+0.2
3,674,813	-		SO3520	0.18	-2.2
3,674,827	-		SO3520	0.21	-0.7
3,674,829	+		SO3520	0.21	-0.4
3,674,829	+		SO3520	0.21	-0.6
3,674,837	-		SO3520	0.23	-1.3
3,674,837	-		SO3520	0.23	-0.9
3,674,896	-		SO3520	0.35	-1.8
3,674,911	+		SO3520	0.37	-1.5
3,674,930	-		SO3520	0.41	+0.0
3,674,935	+		SO3520	0.42	+0.6
3,674,943	-		SO3520	0.44	-0.5
3,674,982	+		SO3520	0.51	+0.7
3,674,990	+		SO3520	0.53	-0.3
3,675,019	+		SO3520	0.58	+0.3
3,675,021	+		SO3520	0.59	-0.2
3,675,029	+		SO3520	0.60	-0.2
3,675,111	-		SO3520	0.76	+0.7
3,675,159	+		SO3520	0.86	+0.8
3,675,161	-		SO3520	0.86	-1.2
3,675,169	+		SO3520	0.88	+0.0
3,675,193	+				-0.7
3,675,206	-				+0.8
3,675,206	-				-0.2
3,675,206	-				+0.0
3,675,252	-				-1.9
3,675,263	+				-1.0
3,675,265	+				-1.7
3,675,265	+				+1.8
3,675,271	-				+0.3
3,675,273	+				+0.6
3,675,273	+				-0.2
3,675,273	-				-1.6
3,675,275	+				+0.0
3,675,275	+				-1.7
3,675,280	+				-1.4
3,675,280	+				-0.1
3,675,280	+				+0.6
3,675,280	+				-1.0
3,675,280	+				+0.0
3,675,283	-				-0.2
3,675,288	-				-0.9
3,675,288	-				-0.9
3,675,288	-				-1.0
3,675,288	-				-0.2
3,675,288	-				-0.6
3,675,288	-				+0.6
3,675,290	+				+0.7
3,675,296	-				-1.0
3,675,298	-				+1.0
3,675,298	-				-2.9
3,675,298	-				-0.9
3,675,300	+				-2.4
3,675,308	+				+0.2
3,675,308	+				+0.8
3,675,308	+				-0.6
3,675,308	+				+0.7
3,675,308	+				+0.8
3,675,308	+				+0.5
3,675,308	+				-0.2
3,675,308	+				-0.3
3,675,308	+				+1.2
3,675,316	+				-3.1
3,675,316	-				+0.1
3,675,316	-				+0.5
3,675,316	-				-0.9
3,675,323	-				-2.2
3,675,330	+				+0.4
3,675,330	+				+1.3
3,675,330	+				+0.9
3,675,420	-				-2.1
3,675,474	-				+0.3
3,675,544	-				+0.3
3,675,544	-				-1.6
3,675,593	-		SO3521	0.15	-0.2
3,675,664	+		SO3521	0.30	-1.3
3,675,693	+		SO3521	0.36	-1.8
3,675,713	+		SO3521	0.40	-1.7
3,675,715	+		SO3521	0.40	-0.5
3,675,715	+		SO3521	0.40	+0.1
3,675,717	-		SO3521	0.40	-0.6
3,675,723	-		SO3521	0.42	-2.9
3,675,723	-		SO3521	0.42	+0.0
3,675,725	-		SO3521	0.42	+0.3
3,675,728	+		SO3521	0.43	-0.9
3,675,730	+		SO3521	0.43	-1.1
3,675,738	-		SO3521	0.45	+1.3
3,675,743	-		SO3521	0.46	+0.8
3,675,748	-		SO3521	0.47	-0.1
3,675,752	+		SO3521	0.47	-0.6
3,675,753	+		SO3521	0.48	+0.8
3,675,761	+		SO3521	0.49	+3.1
3,675,761	+		SO3521	0.49	-0.4
3,675,769	-		SO3521	0.51	-1.0
3,675,824	+		SO3521	0.62	-0.2
3,675,824	+		SO3521	0.62	+0.1
3,675,873	+		SO3521	0.72	-1.0
3,675,873	+		SO3521	0.72	-1.0
3,675,880	+		SO3521	0.73	-0.2
3,675,888	-		SO3521	0.75	+0.3
3,675,888	-		SO3521	0.75	-2.5
3,675,910	+		SO3521	0.79	-0.8
3,675,910	+		SO3521	0.79	-0.1
3,675,965	+				-1.2
3,675,965	+				+0.8
3,675,965	+				+0.7
3,675,965	+				-1.7
3,675,965	+				-0.4
3,675,970	+				-1.9
3,675,973	-				+0.7
3,675,997	-				+0.4
3,676,023	+				+1.6
3,676,031	-				-1.0
3,676,033	+				-1.2
3,676,033	+				-1.9
3,676,041	+				-1.9
3,676,049	-				-0.4
3,676,049	-				-0.8