Strain Fitness in Shewanella oneidensis MR-1 around SO3060

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
3,173,537	-		SO3059	0.54	-1.8
3,173,546	-		SO3059	0.55	-0.4
3,173,737	-		SO3059	0.67	-0.1
3,173,810	-		SO3059	0.72	-3.1
3,173,862	-		SO3059	0.76	+0.7
3,174,008	+		SO3059	0.85	-0.7
3,174,015	+		SO3059	0.86	-0.8
3,174,026	+		SO3059	0.86	+0.3
3,174,060	+		SO3059	0.88	-1.5
3,174,068	-		SO3059	0.89	-0.2
3,174,125	+				-1.7
3,174,220	+				+0.7
3,174,230	+				+0.6
3,174,312	+				-1.0
3,174,460	-		SO3060	0.12	+0.1
3,174,498	+		SO3060	0.15	-0.7
3,174,624	-		SO3060	0.26	+0.1
3,174,633	+		SO3060	0.27	-1.9
3,174,699	+		SO3060	0.32	-1.4
3,174,751	+		SO3060	0.37	-0.5
3,174,780	+		SO3060	0.39	-0.2
3,174,831	-		SO3060	0.44	-0.7
3,174,857	+		SO3060	0.46	-0.3
3,174,860	-		SO3060	0.46	+0.4
3,174,865	-		SO3060	0.46	+0.3
3,174,865	-		SO3060	0.46	-2.3
3,175,077	-		SO3060	0.65	-0.9
3,175,093	+		SO3060	0.66	-2.2
3,175,101	-		SO3060	0.67	+0.6
3,175,110	+		SO3060	0.67	-1.3
3,175,411	+				+1.5
3,175,454	-				+0.6
3,175,462	-				+0.2
3,175,566	+				+0.5
3,175,927	-				+0.4
3,175,964	-	topB	SO3061	0.11	-1.5
3,176,057	+	topB	SO3061	0.15	-1.2
3,176,167	+	topB	SO3061	0.20	-0.4
3,176,444	-	topB	SO3061	0.33	-2.2
3,176,446	-	topB	SO3061	0.33	-0.6