Strain Fitness in Shewanella oneidensis MR-1 around SO3006

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
3,120,690	+		SO3004	0.48	+1.1
3,120,698	-		SO3004	0.49	+1.9
3,120,738	-		SO3004	0.53	+3.1
3,120,818	+		SO3004	0.61	+2.4
3,120,885	-		SO3004	0.68	+3.5
3,120,986	-		SO3004	0.78	+1.5
3,120,986	-		SO3004	0.78	+1.5
3,120,988	+		SO3004	0.79	+2.7
3,120,996	-		SO3004	0.79	+1.6
3,120,996	-		SO3004	0.79	+2.0
3,121,107	-				+2.1
3,121,222	-				+2.4
3,121,239	+				+2.2
3,121,378	-		SO3005	0.38	+3.1
3,121,413	+		SO3005	0.45	+3.8
3,121,431	-		SO3005	0.48	+1.2
3,121,451	-		SO3005	0.52	+0.3
3,121,480	-		SO3005	0.58	+3.2
3,121,481	-		SO3005	0.58	+2.9
3,121,557	-		SO3005	0.73	+1.0
3,121,557	-		SO3005	0.73	+3.8
3,121,582	+		SO3005	0.79	+1.8
3,121,590	-		SO3005	0.80	+2.6
3,121,749	-				+2.3
3,121,799	+				+2.6
3,121,807	-				+2.8
3,121,865	+		SO3006	0.11	+2.8
3,121,873	-		SO3006	0.11	+2.2
3,121,887	-		SO3006	0.12	+2.3
3,121,888	-		SO3006	0.12	+1.6
3,121,905	-		SO3006	0.13	+2.7
3,121,933	+		SO3006	0.15	+3.4
3,121,933	+		SO3006	0.15	+3.1
3,121,933	+		SO3006	0.15	+0.8
3,122,005	-		SO3006	0.19	+2.2
3,122,018	-		SO3006	0.20	+3.2
3,122,095	+		SO3006	0.24	+2.6
3,122,197	-		SO3006	0.31	+1.5
3,122,203	-		SO3006	0.31	+3.4
3,122,335	-		SO3006	0.39	+1.3
3,122,388	-		SO3006	0.42	+0.9
3,122,403	-		SO3006	0.43	+3.4
3,122,414	+		SO3006	0.44	+1.3
3,122,441	-		SO3006	0.45	+1.1
3,122,632	+		SO3006	0.57	+2.9
3,122,653	+		SO3006	0.58	+2.7
3,122,653	+		SO3006	0.58	+1.9
3,122,653	+		SO3006	0.58	+1.3
3,122,653	+		SO3006	0.58	+3.4
3,122,653	+		SO3006	0.58	+2.0
3,122,653	+		SO3006	0.58	+2.1
3,122,661	-		SO3006	0.58	+2.5
3,122,661	-		SO3006	0.58	+1.4
3,122,661	-		SO3006	0.58	+2.9
3,122,661	-		SO3006	0.58	+2.0
3,122,661	-		SO3006	0.58	-0.1
3,122,661	-		SO3006	0.58	+3.8
3,122,661	-		SO3006	0.58	+2.9
3,122,661	-		SO3006	0.58	+3.0
3,122,677	+		SO3006	0.59	+0.9
3,122,685	-		SO3006	0.60	+2.6
3,122,766	+		SO3006	0.65	+3.2
3,122,787	-		SO3006	0.66	+2.8
3,122,858	+		SO3006	0.70	+3.3
3,122,866	-		SO3006	0.71	+0.8
3,122,866	-		SO3006	0.71	+3.0
3,122,878	-		SO3006	0.71	-0.3
3,122,976	+		SO3006	0.77	+3.1
3,122,978	+		SO3006	0.77	+2.1
3,123,124	+		SO3006	0.86	+3.0
3,123,177	+		SO3006	0.89	+3.8
3,123,284	-				+3.7
3,123,302	+				+2.5
3,123,302	+				+3.1
3,123,310	-				+2.3
3,123,361	-				+2.6
3,123,413	-				+1.9
3,123,413	-				+1.9
3,123,413	-				+1.1
3,123,452	+				+0.7
3,123,452	+				+4.4
3,123,452	+				+1.4
3,123,453	-				+1.2
3,123,529	+				+1.9
3,123,532	-				+0.7
3,123,712	+				+1.5
3,123,748	+		SO3008	0.11	+2.5
3,123,783	-		SO3008	0.19	+2.7
3,123,793	+		SO3008	0.22	+3.2
3,123,802	-		SO3008	0.24	-0.2
3,123,854	-		SO3008	0.36	+2.1
3,123,900	+		SO3008	0.48	+1.9
3,123,900	+		SO3008	0.48	+2.9
3,123,900	+		SO3008	0.48	+1.2
3,123,900	+		SO3008	0.48	+3.6
3,123,908	-		SO3008	0.50	+2.3
3,123,908	-		SO3008	0.50	+0.5
3,124,017	+		SO3008	0.76	+0.3
3,124,025	-		SO3008	0.78	+2.9
3,124,047	+		SO3008	0.83	+3.2
3,124,098	+				+1.7
3,124,099	+				+1.2
3,124,099	+				+3.1
3,124,099	+				+1.6
3,124,099	+				+1.9
3,124,099	+				+2.4
3,124,099	+				+2.4
3,124,099	+				+2.8
3,124,099	+				+1.3
3,124,099	+				+1.8
3,124,106	-				+0.6
3,124,106	-				+3.0
3,124,107	-				+0.5
3,124,107	-				+0.5
3,124,107	-				-0.3
3,124,107	-				+3.1
3,124,107	-				+2.6
3,124,107	-				+2.9
3,124,107	-				+0.3
3,124,116	-				+3.4
3,124,178	-		SO3009	0.23	+0.7
3,124,195	+		SO3009	0.29	+1.4
3,124,336	-		SO3009	0.80	+2.3