Strain Fitness in Shewanella oneidensis MR-1 around SO3000

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
3,117,276	-				-0.2
3,117,277	-				+3.2
3,117,277	-				+1.9
3,117,279	+				+1.0
3,117,282	-				+2.0
3,117,299	+				+3.2
3,117,320	+				+3.6
3,117,320	+				+3.6
3,117,320	+				+2.4
3,117,328	-				+4.0
3,117,378	-				+1.6
3,117,425	-				+3.7
3,117,465	+		SO2997	0.18	+2.4
3,117,470	+		SO2997	0.20	+2.6
3,117,483	+		SO2997	0.24	+4.0
3,117,504	+		SO2997	0.31	+2.6
3,117,514	+		SO2997	0.34	+3.2
3,117,672	+		SO2997	0.86	+2.2
3,117,697	+				+3.9
3,117,794	-		SO2998	0.30	+2.5
3,117,864	-		SO2998	0.55	+3.8
3,118,082	-				+1.3
3,118,091	+		SO2999	0.11	+2.0
3,118,091	+		SO2999	0.11	+2.5
3,118,099	-		SO2999	0.16	+2.3
3,118,241	+				+3.9
3,118,440	-		SO3000	0.33	+2.4
3,118,455	+		SO3000	0.35	+2.2
3,118,576	-		SO3000	0.56	+1.8
3,118,667	-		SO3000	0.71	+4.1
3,118,738	+		SO3000	0.84	+4.0
3,118,738	+		SO3000	0.84	+2.6
3,118,738	+		SO3000	0.84	+1.5
3,118,738	+		SO3000	0.84	+2.3
3,118,739	+		SO3000	0.84	+1.7
3,118,746	-		SO3000	0.85	+3.5
3,118,747	-		SO3000	0.85	+2.1
3,118,773	-		SO3000	0.89	+1.5
3,118,792	+				+2.7
3,118,810	+				+1.1
3,118,880	-		SO3001	0.13	+3.4
3,118,963	+		SO3001	0.34	+2.7
3,118,971	-		SO3001	0.36	+3.6
3,118,975	+		SO3001	0.37	+2.8
3,118,983	+		SO3001	0.39	+3.3
3,118,996	+		SO3001	0.42	+4.4
3,119,132	-		SO3001	0.77	+1.2
3,119,141	+		SO3001	0.79	+4.3
3,119,170	+		SO3001	0.87	+0.4
3,119,201	+				+3.7
3,119,463	-		SO3002	0.37	+2.4
3,119,611	+		SO3002	0.59	+2.8
3,119,672	+		SO3002	0.68	+2.0
3,119,672	+		SO3002	0.68	+1.7
3,119,682	+		SO3002	0.69	+2.9
3,119,762	-		SO3002	0.81	+1.9