Experiment: Cisplatin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2981 and SO2982 overlap by 10 nucleotides SO2982 and SO2983 overlap by 4 nucleotides SO2983 and SO2984 overlap by 17 nucleotides SO2984 and O overlap by 29 nucleotides
SO2981: SO2981 - hypothetical protein (NCBI ptt file), at 3,109,165 to 3,109,749
SO2981
SO2982: SO2982 - hypothetical protein (NCBI ptt file), at 3,109,740 to 3,110,255
SO2982
SO2983: SO2983 - hypothetical protein (NCBI ptt file), at 3,110,252 to 3,110,644
SO2983
SO2984: SO2984 - conserved hypothetical protein (NCBI ptt file), at 3,110,628 to 3,111,188
SO2984
SO2985: O - prophage LambdaSo, replication protein O (NCBI ptt file), at 3,111,160 to 3,112,176
O
Position (kb)
3110
3111 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3109.436 kb on + strand, within SO2981 at 3109.669 kb on + strand, within SO2981 at 3109.702 kb on - strand at 3109.750 kb on + strand at 3109.808 kb on + strand, within SO2982 at 3109.808 kb on + strand, within SO2982 at 3109.843 kb on + strand, within SO2982 at 3109.910 kb on - strand, within SO2982 at 3109.910 kb on - strand, within SO2982 at 3109.949 kb on - strand, within SO2982 at 3109.950 kb on - strand, within SO2982 at 3109.961 kb on + strand, within SO2982 at 3110.003 kb on + strand, within SO2982 at 3110.045 kb on - strand, within SO2982 at 3110.098 kb on + strand, within SO2982 at 3110.103 kb on + strand, within SO2982 at 3110.113 kb on + strand, within SO2982 at 3110.113 kb on + strand, within SO2982 at 3110.113 kb on + strand, within SO2982 at 3110.113 kb on + strand, within SO2982 at 3110.116 kb on - strand, within SO2982 at 3110.121 kb on - strand, within SO2982 at 3110.121 kb on - strand, within SO2982 at 3110.121 kb on - strand, within SO2982 at 3110.121 kb on - strand, within SO2982 at 3110.121 kb on - strand, within SO2982 at 3110.141 kb on + strand, within SO2982 at 3110.168 kb on - strand, within SO2982 at 3110.173 kb on + strand, within SO2982 at 3110.173 kb on + strand, within SO2982 at 3110.181 kb on - strand, within SO2982 at 3110.216 kb on - strand at 3110.273 kb on - strand at 3110.273 kb on - strand at 3110.332 kb on + strand, within SO2983 at 3110.340 kb on - strand, within SO2983 at 3110.387 kb on - strand, within SO2983 at 3110.468 kb on + strand, within SO2983 at 3110.475 kb on + strand, within SO2983 at 3110.483 kb on - strand, within SO2983 at 3110.574 kb on + strand, within SO2983 at 3110.859 kb on - strand, within SO2984 at 3110.882 kb on - strand, within SO2984 at 3110.961 kb on - strand, within SO2984 at 3110.972 kb on - strand, within SO2984 at 3110.983 kb on + strand, within SO2984 at 3110.983 kb on + strand, within SO2984 at 3110.985 kb on - strand, within SO2984 at 3111.242 kb on - strand at 3111.274 kb on + strand, within O at 3111.285 kb on + strand, within O at 3111.401 kb on - strand, within O at 3111.478 kb on + strand, within O at 3111.487 kb on + strand, within O at 3111.509 kb on - strand, within O at 3111.598 kb on - strand, within O at 3111.598 kb on - strand, within O at 3111.629 kb on + strand, within O
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.004 mg/ml remove 3,109,436 + SO2981 0.46 +3.9 3,109,669 + SO2981 0.86 +4.0 3,109,702 - +0.9 3,109,750 + +2.8 3,109,808 + SO2982 0.13 +4.5 3,109,808 + SO2982 0.13 +3.5 3,109,843 + SO2982 0.20 +4.8 3,109,910 - SO2982 0.33 +0.9 3,109,910 - SO2982 0.33 +2.8 3,109,949 - SO2982 0.41 +3.8 3,109,950 - SO2982 0.41 +2.1 3,109,961 + SO2982 0.43 +4.6 3,110,003 + SO2982 0.51 +3.7 3,110,045 - SO2982 0.59 +3.8 3,110,098 + SO2982 0.69 +2.3 3,110,103 + SO2982 0.70 +4.3 3,110,113 + SO2982 0.72 +1.1 3,110,113 + SO2982 0.72 +4.4 3,110,113 + SO2982 0.72 +2.5 3,110,113 + SO2982 0.72 +3.0 3,110,116 - SO2982 0.73 +4.6 3,110,121 - SO2982 0.74 +4.5 3,110,121 - SO2982 0.74 +4.5 3,110,121 - SO2982 0.74 +3.2 3,110,121 - SO2982 0.74 +2.3 3,110,121 - SO2982 0.74 +3.8 3,110,141 + SO2982 0.78 +4.1 3,110,168 - SO2982 0.83 +1.9 3,110,173 + SO2982 0.84 +4.1 3,110,173 + SO2982 0.84 +1.6 3,110,181 - SO2982 0.85 +2.7 3,110,216 - +1.3 3,110,273 - +1.1 3,110,273 - -0.1 3,110,332 + SO2983 0.20 +2.2 3,110,340 - SO2983 0.22 -1.4 3,110,387 - SO2983 0.34 +2.5 3,110,468 + SO2983 0.55 +3.9 3,110,475 + SO2983 0.57 +4.4 3,110,483 - SO2983 0.59 +3.3 3,110,574 + SO2983 0.82 +1.8 3,110,859 - SO2984 0.41 -1.1 3,110,882 - SO2984 0.45 -0.4 3,110,961 - SO2984 0.59 -1.2 3,110,972 - SO2984 0.61 -2.9 3,110,983 + SO2984 0.63 -0.6 3,110,983 + SO2984 0.63 -0.4 3,110,985 - SO2984 0.64 -0.4 3,111,242 - -2.0 3,111,274 + O SO2985 0.11 -1.6 3,111,285 + O SO2985 0.12 -2.6 3,111,401 - O SO2985 0.24 -1.7 3,111,478 + O SO2985 0.31 -0.4 3,111,487 + O SO2985 0.32 -0.5 3,111,509 - O SO2985 0.34 -1.6 3,111,598 - O SO2985 0.43 -0.3 3,111,598 - O SO2985 0.43 +0.0 3,111,629 + O SO2985 0.46 -1.6
Or see this region's nucleotide sequence