Strain Fitness in Shewanella oneidensis MR-1 around SO2949

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
3,085,791	-				+1.2
3,085,918	-		SO2948	0.10	+2.8
3,085,920	-		SO2948	0.10	+3.3
3,085,979	-		SO2948	0.19	+1.3
3,086,080	+		SO2948	0.33	+1.3
3,086,192	+		SO2948	0.48	+3.3
3,086,209	+		SO2948	0.51	+2.9
3,086,219	+		SO2948	0.52	+1.0
3,086,227	-		SO2948	0.53	+3.5
3,086,292	-		SO2948	0.62	+3.4
3,086,372	+		SO2948	0.74	+2.0
3,086,615	+				+3.7
3,086,638	-				+3.1
3,086,647	+				+2.6
3,086,706	+		SO2949	0.13	+2.1
3,086,709	-		SO2949	0.13	+1.9
3,086,715	-		SO2949	0.14	+4.4
3,086,720	-		SO2949	0.15	+4.2
3,086,810	-		SO2949	0.27	+2.8
3,086,876	-		SO2949	0.37	+3.5
3,086,893	-		SO2949	0.39	+2.9
3,087,008	+		SO2949	0.55	+2.2
3,087,019	+		SO2949	0.56	+1.6
3,087,128	-		SO2949	0.71	+1.8
3,087,128	-		SO2949	0.71	+3.3
3,087,138	+		SO2949	0.73	+1.6
3,087,149	+		SO2949	0.74	+3.8
3,087,162	-		SO2949	0.76	+1.3
3,087,306	+				+2.9
3,087,306	+				+4.2
3,087,306	+				+3.1
3,087,306	+				+2.2
3,087,306	+				+1.9
3,087,314	-				+4.5
3,087,314	-				+4.2
3,087,376	+				+1.7
3,087,376	+				+2.5
3,087,383	+				+2.2
3,087,384	-				+4.1
3,087,384	-				+3.4
3,087,384	-				+3.5
3,087,384	-				+4.3
3,087,477	-		SO2950	0.22	+1.4
3,087,477	-		SO2950	0.22	+3.5
3,087,590	+		SO2950	0.40	+2.1
3,087,674	-		SO2950	0.52	+1.6
3,087,674	-		SO2950	0.52	+1.7
3,087,674	-		SO2950	0.52	+2.1
3,087,674	-		SO2950	0.52	+4.5
3,087,689	-		SO2950	0.55	+2.2
3,087,765	+		SO2950	0.66	+3.3
3,087,771	+		SO2950	0.67	+1.7
3,087,883	+		SO2950	0.84	+3.4
3,087,891	-		SO2950	0.85	+3.7
3,087,895	+		SO2950	0.86	+4.2
3,087,895	-		SO2950	0.86	+3.1
3,087,903	+		SO2950	0.87	+3.0
3,087,910	+		SO2950	0.88	+4.4
3,087,911	-		SO2950	0.88	+3.7
3,087,950	+				+2.6
3,088,064	-				+1.8
3,088,166	-				+3.6
3,088,173	+				+1.6
3,088,181	-				+3.5
3,088,190	-				+2.2
3,088,200	+				+1.9
3,088,244	-		SO2951	0.12	+1.3
3,088,251	+		SO2951	0.12	+4.1
3,088,251	+		SO2951	0.12	+3.0
3,088,279	+		SO2951	0.14	+1.6