Strain Fitness in Shewanella oneidensis MR-1 around SO2939

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
3,074,517	+				-2.5
3,074,549	-				+0.7
3,074,558	+				+0.5
3,074,561	-				+0.4
3,074,568	+				-1.6
3,074,680	+				+1.0
3,074,683	+				+2.8
3,074,688	-				+2.7
3,074,701	-				+3.3
3,074,730	+				+3.8
3,074,730	+				+3.4
3,074,738	-				+2.1
3,074,738	-				+3.1
3,074,738	-				+2.3
3,074,738	-				+2.9
3,074,873	+				+2.4
3,074,886	-				+2.8
3,074,908	+				-0.0
3,074,996	+		SO2938	0.24	+1.6
3,075,071	+		SO2938	0.38	+0.9
3,075,071	+		SO2938	0.38	+2.0
3,075,071	+		SO2938	0.38	+2.2
3,075,071	+		SO2938	0.38	+2.3
3,075,132	-		SO2938	0.49	+0.8
3,075,154	-		SO2938	0.53	+2.4
3,075,176	+		SO2938	0.57	+2.3
3,075,206	+		SO2938	0.63	+1.9
3,075,297	-		SO2938	0.79	+2.1
3,075,307	-		SO2938	0.81	+1.9
3,075,307	-		SO2938	0.81	+2.0
3,075,333	-		SO2938	0.86	+0.8
3,075,446	+				+3.5
3,075,446	+				+2.7
3,075,524	-		SO2939	0.16	+2.1
3,075,541	-		SO2939	0.19	+3.6
3,075,594	+		SO2939	0.26	+2.0
3,075,596	+		SO2939	0.26	+2.8
3,075,596	+		SO2939	0.26	+1.9
3,075,597	-		SO2939	0.26	+1.3
3,075,597	-		SO2939	0.26	+1.5
3,075,604	-		SO2939	0.27	+3.3
3,075,604	-		SO2939	0.27	+2.8
3,075,604	-		SO2939	0.27	+3.0
3,075,609	-		SO2939	0.28	+3.0
3,075,663	+		SO2939	0.36	+3.5
3,075,671	-		SO2939	0.37	+3.3
3,075,685	+		SO2939	0.39	+1.4
3,075,693	-		SO2939	0.40	+3.6
3,075,760	+		SO2939	0.49	+3.0
3,075,827	+		SO2939	0.59	+1.9
3,075,865	+		SO2939	0.64	+2.1
3,075,873	-		SO2939	0.65	+2.9
3,075,873	-		SO2939	0.65	+1.8
3,075,873	-		SO2939	0.65	+3.7
3,075,881	-		SO2939	0.66	+2.2
3,075,906	+		SO2939	0.70	+3.9
3,075,944	-		SO2939	0.75	+3.8
3,075,946	-		SO2939	0.76	+4.8
3,076,114	+				+1.2
3,076,114	+				+0.8
3,076,149	+				+1.5
3,076,150	+				+2.7
3,076,157	-				+1.5
3,076,158	-				+3.5
3,076,158	-				+2.9
3,076,169	-				+4.0
3,076,169	-				+3.3
3,076,190	-				+3.7
3,076,205	+				+3.6
3,076,219	+				+2.4
3,076,260	+				+3.3
3,076,268	+				+2.8
3,076,275	+				+2.0
3,076,275	+				+3.3
3,076,292	+				+3.6
3,076,334	-				+3.3
3,076,344	-				+4.1
3,076,354	-				+1.5
3,076,355	-				+2.3
3,076,362	-				+1.9
3,076,384	+				+1.6
3,076,397	-				+1.8
3,076,434	+				+1.4
3,076,442	-				+1.6
3,076,524	+				+4.2
3,076,524	+				+2.2
3,076,532	-				+3.3
3,076,566	-				+2.1
3,076,567	-				+3.0
3,076,572	-				+3.0
3,076,621	+				+0.6
3,076,686	+				+2.0
3,076,694	-				+3.4
3,076,694	-				+3.6
3,076,704	-				+2.3
3,076,784	+				+0.7
3,076,784	+				+3.5
3,076,794	+				+1.4
3,076,802	-				+3.8
3,076,927	+		SO2940	0.12	+3.2
3,076,952	-		SO2940	0.13	+3.0
3,076,964	-		SO2940	0.13	+3.1
3,077,023	+		SO2940	0.14	+1.4
3,077,030	+		SO2940	0.15	+2.7
3,077,031	-		SO2940	0.15	+3.2
3,077,035	+		SO2940	0.15	+3.2
3,077,035	+		SO2940	0.15	+2.4
3,077,040	+		SO2940	0.15	+4.4
3,077,040	+		SO2940	0.15	+1.2
3,077,040	+		SO2940	0.15	+4.2
3,077,040	+		SO2940	0.15	+1.9
3,077,043	-		SO2940	0.15	+1.8
3,077,048	-		SO2940	0.15	+2.3
3,077,088	-		SO2940	0.16	+4.6
3,077,119	+		SO2940	0.17	+0.9