Strain Fitness in Shewanella oneidensis MR-1 around SO2702

Experiment: Cisplatin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2700 and SO2701 are separated by 2 nucleotidesSO2701 and SO2702 overlap by 11 nucleotidesSO2702 and SO2703 overlap by 16 nucleotidesSO2703 and SO2704 are separated by 65 nucleotides SO2700: SO2700 - prophage MuSo2, baseplate assembly protein V (NCBI ptt file), at 2,818,312 to 2,818,959 SO2700 SO2701: SO2701 - conserved hypothetical protein (NCBI ptt file), at 2,818,962 to 2,819,417 SO2701 SO2702: SO2702 - conserved hypothetical protein (NCBI ptt file), at 2,819,407 to 2,820,474 SO2702 SO2703: SO2703 - conserved hypothetical protein (NCBI ptt file), at 2,820,459 to 2,821,043 SO2703 SO2704: SO2704 - prophage MuSo2, tail fiber protein, putative (NCBI ptt file), at 2,821,109 to 2,822,836 SO2704 Position (kb) 2819 2820 2821Strain fitness (log2 ratio) -1 0 1 2 3 4at 2818.753 kb on - strand, within SO2700at 2818.753 kb on - strand, within SO2700at 2818.772 kb on - strand, within SO2700at 2818.810 kb on - strand, within SO2700at 2819.015 kb on - strand, within SO2701at 2819.066 kb on + strand, within SO2701at 2819.121 kb on - strand, within SO2701at 2819.156 kb on + strand, within SO2701at 2819.164 kb on + strand, within SO2701at 2819.221 kb on - strand, within SO2701at 2819.313 kb on - strand, within SO2701at 2819.313 kb on - strand, within SO2701at 2819.326 kb on - strand, within SO2701at 2819.392 kb on - strandat 2819.417 kb on - strandat 2819.498 kb on + strandat 2819.860 kb on + strand, within SO2702at 2819.940 kb on - strand, within SO2702at 2819.983 kb on + strand, within SO2702at 2819.983 kb on + strand, within SO2702at 2819.983 kb on + strand, within SO2702at 2819.983 kb on + strand, within SO2702at 2819.991 kb on - strand, within SO2702at 2819.991 kb on - strand, within SO2702at 2820.010 kb on - strand, within SO2702at 2820.317 kb on + strand, within SO2702at 2820.367 kb on + strand, within SO2702at 2820.395 kb on + strandat 2820.460 kb on - strandat 2820.469 kb on + strandat 2820.477 kb on - strandat 2820.477 kb on - strandat 2820.484 kb on - strandat 2820.558 kb on + strand, within SO2703at 2820.558 kb on + strand, within SO2703at 2820.566 kb on - strand, within SO2703at 2820.566 kb on - strand, within SO2703at 2820.572 kb on - strand, within SO2703at 2820.792 kb on + strand, within SO2703at 2820.868 kb on - strand, within SO2703at 2820.878 kb on - strand, within SO2703at 2820.884 kb on + strand, within SO2703at 2820.894 kb on - strand, within SO2703at 2820.921 kb on + strand, within SO2703at 2820.929 kb on - strand, within SO2703at 2820.944 kb on + strand, within SO2703at 2820.996 kb on - strandat 2820.996 kb on - strandat 2821.107 kb on - strandat 2821.149 kb on - strandat 2821.204 kb on - strandat 2821.226 kb on - strandat 2821.234 kb on + strandat 2821.284 kb on - strand, within SO2704at 2821.412 kb on - strand, within SO2704

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.004 mg/ml
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2,818,753 - SO2700 0.68 +1.9
2,818,753 - SO2700 0.68 +3.3
2,818,772 - SO2700 0.71 +2.1
2,818,810 - SO2700 0.77 +1.7
2,819,015 - SO2701 0.12 +2.3
2,819,066 + SO2701 0.23 +2.6
2,819,121 - SO2701 0.35 +3.2
2,819,156 + SO2701 0.43 +2.2
2,819,164 + SO2701 0.44 +2.5
2,819,221 - SO2701 0.57 +1.9
2,819,313 - SO2701 0.77 +3.2
2,819,313 - SO2701 0.77 +3.2
2,819,326 - SO2701 0.80 +2.1
2,819,392 - +2.6
2,819,417 - +1.0
2,819,498 + +2.1
2,819,860 + SO2702 0.42 +3.2
2,819,940 - SO2702 0.50 +2.3
2,819,983 + SO2702 0.54 +1.7
2,819,983 + SO2702 0.54 +2.5
2,819,983 + SO2702 0.54 +4.1
2,819,983 + SO2702 0.54 +3.2
2,819,991 - SO2702 0.55 +3.0
2,819,991 - SO2702 0.55 +3.9
2,820,010 - SO2702 0.56 +1.9
2,820,317 + SO2702 0.85 +2.7
2,820,367 + SO2702 0.90 +3.2
2,820,395 + +1.4
2,820,460 - +3.7
2,820,469 + +3.7
2,820,477 - +2.7
2,820,477 - +3.6
2,820,484 - +3.5
2,820,558 + SO2703 0.17 +2.7
2,820,558 + SO2703 0.17 +2.0
2,820,566 - SO2703 0.18 +3.3
2,820,566 - SO2703 0.18 +2.8
2,820,572 - SO2703 0.19 +3.0
2,820,792 + SO2703 0.57 +3.9
2,820,868 - SO2703 0.70 +3.3
2,820,878 - SO2703 0.72 +3.3
2,820,884 + SO2703 0.73 +1.7
2,820,894 - SO2703 0.74 +3.3
2,820,921 + SO2703 0.79 +2.7
2,820,929 - SO2703 0.80 +2.4
2,820,944 + SO2703 0.83 +1.7
2,820,996 - +2.9
2,820,996 - +3.2
2,821,107 - +1.0
2,821,149 - +1.5
2,821,204 - +3.7
2,821,226 - +3.1
2,821,234 + +1.9
2,821,284 - SO2704 0.10 +2.4
2,821,412 - SO2704 0.18 +3.0

Or see this region's nucleotide sequence