Strain Fitness in Shewanella oneidensis MR-1 around SO2667

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
2,795,812	+		SO2664	0.60	+3.5
2,795,992	+		SO2665	0.11	+2.0
2,796,054	-		SO2665	0.35	+4.0
2,796,054	-		SO2665	0.35	+3.2
2,796,054	-		SO2665	0.35	+2.4
2,796,104	+		SO2665	0.54	+3.7
2,796,112	-		SO2665	0.57	+3.2
2,796,197	-				+1.7
2,796,216	+				+1.5
2,796,216	+				+2.5
2,796,216	+				+3.1
2,796,279	-				+4.1
2,796,282	-				+1.5
2,796,336	-		SO2666	0.19	+2.4
2,796,346	-		SO2666	0.20	+4.0
2,796,351	-		SO2666	0.21	+0.7
2,796,375	+		SO2666	0.25	+2.5
2,796,442	-		SO2666	0.37	+1.8
2,796,442	-		SO2666	0.37	+3.4
2,796,442	-		SO2666	0.37	+3.1
2,796,467	+		SO2666	0.42	+1.7
2,796,587	+		SO2666	0.63	+1.2
2,796,595	-		SO2666	0.64	+2.0
2,796,622	+		SO2666	0.69	+3.0
2,796,622	+		SO2666	0.69	+3.2
2,796,624	+		SO2666	0.69	+0.9
2,796,630	-		SO2666	0.70	+2.9
2,796,630	-		SO2666	0.70	+2.0
2,796,630	-		SO2666	0.70	+3.2
2,796,630	-		SO2666	0.70	+2.0
2,796,665	+		SO2666	0.77	+1.7
2,796,665	+		SO2666	0.77	+2.3
2,796,666	-		SO2666	0.77	+3.5
2,796,705	+		SO2666	0.84	+2.7
2,796,705	+		SO2666	0.84	+3.3
2,796,741	-				+2.9
2,796,745	+				+3.7
2,796,750	+				+1.9
2,796,758	-				+2.0
2,796,758	-				+2.1
2,796,759	+				+4.0
2,796,815	+				+3.6
2,796,816	+				+3.1
2,796,816	+				+2.0
2,796,816	+				+1.7
2,796,816	+				+4.0
2,796,816	+				+1.5
2,796,816	+				+1.2
2,796,816	+				+0.9
2,796,816	+				+3.3
2,796,816	+				+2.2
2,796,816	+				+3.4
2,796,816	+				+3.8
2,796,816	+				+3.3
2,796,824	-				+4.0
2,796,824	-				+3.6
2,796,824	-				+3.2
2,796,824	-				+3.6
2,796,824	-				+1.9
2,796,826	+				+3.6
2,796,896	+		SO2667	0.17	+3.4
2,796,931	+		SO2667	0.23	+1.9
2,796,951	+		SO2667	0.27	+3.2
2,796,951	+		SO2667	0.27	+2.0
2,796,951	+		SO2667	0.27	+2.3
2,796,951	+		SO2667	0.27	+3.1
2,796,966	+		SO2667	0.30	+2.7
2,796,974	+		SO2667	0.31	+3.3
2,797,139	+		SO2667	0.62	+2.4
2,797,147	-		SO2667	0.64	+2.3
2,797,159	+		SO2667	0.66	+2.2
2,797,159	+		SO2667	0.66	+2.3
2,797,164	+		SO2667	0.67	+3.4
2,797,164	+		SO2667	0.67	+2.4
2,797,172	-		SO2667	0.69	+2.7
2,797,194	+		SO2667	0.73	+1.7
2,797,194	+		SO2667	0.73	+0.4
2,797,194	+		SO2667	0.73	+3.5
2,797,202	-		SO2667	0.74	+1.7
2,797,202	-		SO2667	0.74	+3.0
2,797,202	-		SO2667	0.74	+3.2
2,797,202	-		SO2667	0.74	+3.9
2,797,202	-		SO2667	0.74	+2.2
2,797,202	-		SO2667	0.74	+3.5
2,797,209	-		SO2667	0.75	+2.4
2,797,303	+				+2.2
2,797,304	+				+3.1
2,797,316	-				+1.2
2,797,358	+				+3.4
2,797,363	+				+2.1
2,797,370	-				+2.2
2,797,449	+				+2.1
2,797,449	+				+2.9
2,797,449	+				+3.2
2,797,449	+				+2.6
2,797,457	-				+2.7
2,797,457	-				+2.1
2,797,457	-				+2.9
2,797,457	-				+3.6
2,797,488	+				+3.3
2,797,496	-				+3.0
2,797,507	+				+3.6
2,797,507	+				+1.9
2,797,507	+				+2.7
2,797,507	+				+3.3
2,797,515	-				+2.5
2,797,549	-				+1.6
2,797,614	-				+3.4
2,797,620	+				+3.8
2,797,622	+				+4.1
2,797,628	-				+3.9
2,797,635	+				+5.1
2,797,690	+				+3.8
2,797,707	+				+4.7
2,797,712	+				+4.5
2,797,712	+				+5.6
2,797,712	+				+4.3
2,797,712	+				+4.6
2,797,712	+				+4.6
2,797,720	-				+5.6
2,797,720	-				+5.1
2,797,720	-				+5.2
2,797,720	-				+6.1
2,797,720	-				+3.8
2,797,720	-				+5.3
2,797,722	+				+3.8
2,797,729	+				+4.3
2,797,729	+				+4.8
2,797,729	+				+5.1
2,797,729	+				+4.4
2,797,729	+				+4.0
2,797,729	+				+4.2
2,797,729	+				+4.4
2,797,729	+				+4.0
2,797,729	+				+4.9
2,797,729	+				+4.7
2,797,729	+				+3.8
2,797,729	+				+2.5
2,797,729	+				+4.2
2,797,729	+				+5.4
2,797,729	+				+4.7
2,797,729	+				+5.4
2,797,737	-				+3.0
2,797,737	-				+3.4
2,797,737	-				+5.3
2,797,737	-				+5.4
2,797,737	-				+2.9
2,797,737	-				+4.2
2,797,737	-				+5.2
2,797,737	-				+4.0
2,797,737	-				+3.3
2,797,737	-				+3.5
2,797,737	-				+3.7
2,797,737	-				+3.8
2,797,737	-				+5.5
2,797,737	-				+4.4
2,797,783	-		SO2668	0.19	+5.4
2,797,798	-		SO2668	0.22	+5.0
2,797,808	-		SO2668	0.25	+4.7
2,797,830	+		SO2668	0.30	+4.2
2,797,830	+		SO2668	0.30	+7.0
2,797,833	-		SO2668	0.30	+6.3
2,797,840	-		SO2668	0.32	+6.2
2,797,861	+		SO2668	0.37	+5.2
2,797,880	-		SO2668	0.41	+4.5
2,797,881	+		SO2668	0.41	+6.7
2,797,923	-		SO2668	0.51	+5.2
2,797,942	-		SO2668	0.55	+5.6
2,797,976	-		SO2668	0.63	+5.1
2,798,014	+		SO2668	0.72	+4.1
2,798,021	+		SO2668	0.73	+4.6
2,798,021	+		SO2668	0.73	+3.9
2,798,022	-		SO2668	0.74	+4.4
2,798,022	-		SO2668	0.74	+7.0
2,798,023	+		SO2668	0.74	+5.8
2,798,028	+		SO2668	0.75	+4.4
2,798,029	+		SO2668	0.75	+5.6
2,798,030	+		SO2668	0.75	+3.5
2,798,031	-		SO2668	0.76	+5.4
2,798,036	-		SO2668	0.77	+4.5
2,798,036	-		SO2668	0.77	+4.9
2,798,036	-		SO2668	0.77	+5.3
2,798,061	-		SO2668	0.82	+6.0
2,798,066	-		SO2668	0.84	+5.7
2,798,154	-				+2.2
2,798,161	-				+1.6
2,798,189	+		SO2669	0.18	+2.5
2,798,190	+		SO2669	0.18	+1.0
2,798,197	-		SO2669	0.22	+2.0
2,798,205	+		SO2669	0.26	+3.2
2,798,205	+		SO2669	0.26	+2.7
2,798,205	+		SO2669	0.26	+3.1
2,798,205	+		SO2669	0.26	+1.6
2,798,213	-		SO2669	0.30	+3.2
2,798,213	-		SO2669	0.30	+2.7
2,798,215	+		SO2669	0.31	+2.4
2,798,216	+		SO2669	0.32	+1.7
2,798,216	+		SO2669	0.32	+2.6
2,798,216	+		SO2669	0.32	+0.8
2,798,223	-		SO2669	0.35	+1.8
2,798,223	-		SO2669	0.35	+0.3
2,798,223	-		SO2669	0.35	+2.7
2,798,223	-		SO2669	0.35	+2.2
2,798,224	-		SO2669	0.36	+3.0
2,798,234	+		SO2669	0.41	+2.6
2,798,234	+		SO2669	0.41	+2.1
2,798,234	+		SO2669	0.41	+1.6
2,798,242	+		SO2669	0.45	+1.2
2,798,242	-		SO2669	0.45	+2.1
2,798,242	-		SO2669	0.45	+2.3
2,798,252	-		SO2669	0.50	+1.2
2,798,252	-		SO2669	0.50	+2.5
2,798,252	-		SO2669	0.50	+1.9
2,798,280	+		SO2669	0.65	+3.3
2,798,335	-				+2.7