Strain Fitness in Shewanella oneidensis MR-1 around SO2591

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
2,718,710	-				-1.6
2,718,710	-				-2.4
2,718,735	-				-2.5
2,718,823	+				+0.6
2,718,831	-				+0.5
2,718,831	-				+0.0
2,718,831	-				+0.7
2,718,831	-				-1.3
2,719,017	-				-2.2
2,719,024	-				-1.4
2,719,028	+				+0.0
2,719,084	+				-0.1
2,719,094	-				-1.3
2,719,098	-				-1.2
2,719,128	-		SO2591	0.13	-2.9
2,719,128	-		SO2591	0.13	-2.2
2,719,130	+		SO2591	0.14	-1.0
2,719,138	-		SO2591	0.15	-3.0
2,719,138	-		SO2591	0.15	+0.2
2,719,138	-		SO2591	0.15	-2.6
2,719,138	-		SO2591	0.15	-4.3
2,719,257	+		SO2591	0.38	-2.9
2,719,274	-		SO2591	0.41	-2.2
2,719,355	+		SO2591	0.56	-0.9
2,719,380	-		SO2591	0.61	-2.3
2,719,390	-		SO2591	0.63	-2.3
2,719,391	-		SO2591	0.63	-2.3
2,719,398	-		SO2591	0.64	-1.5
2,719,469	-		SO2591	0.77	-2.8
2,719,527	+		SO2591	0.88	-1.5
2,719,606	-				-0.3
2,719,616	+				-1.9
2,719,862	-				-0.8
2,719,919	-	pyrD	SO2592	0.13	-0.8
2,719,959	-	pyrD	SO2592	0.17	-2.5
2,719,995	+	pyrD	SO2592	0.20	-1.0
2,720,003	-	pyrD	SO2592	0.21	-1.8
2,720,009	+	pyrD	SO2592	0.21	+0.2
2,720,009	+	pyrD	SO2592	0.21	-0.4
2,720,017	-	pyrD	SO2592	0.22	-0.7
2,720,044	+	pyrD	SO2592	0.25	-1.2
2,720,044	+	pyrD	SO2592	0.25	-0.1
2,720,049	-	pyrD	SO2592	0.25	-1.9
2,720,052	-	pyrD	SO2592	0.26	-1.7
2,720,052	-	pyrD	SO2592	0.26	-0.7
2,720,052	-	pyrD	SO2592	0.26	-0.5
2,720,052	-	pyrD	SO2592	0.26	-0.2
2,720,052	-	pyrD	SO2592	0.26	+0.1
2,720,052	-	pyrD	SO2592	0.26	+0.3
2,720,060	+	pyrD	SO2592	0.26	-2.5
2,720,065	+	pyrD	SO2592	0.27	-0.2
2,720,065	+	pyrD	SO2592	0.27	-0.6
2,720,065	+	pyrD	SO2592	0.27	-1.3
2,720,065	+	pyrD	SO2592	0.27	+0.1
2,720,073	-	pyrD	SO2592	0.28	-0.2
2,720,073	-	pyrD	SO2592	0.28	-0.2
2,720,083	-	pyrD	SO2592	0.29	-1.7
2,720,222	-	pyrD	SO2592	0.42	-0.7
2,720,311	-	pyrD	SO2592	0.51	+0.4
2,720,318	+	pyrD	SO2592	0.52	-0.1
2,720,318	+	pyrD	SO2592	0.52	-0.4
2,720,326	-	pyrD	SO2592	0.53	-0.1
2,720,360	-	pyrD	SO2592	0.56	+0.1
2,720,362	+	pyrD	SO2592	0.56	-0.5
2,720,412	-	pyrD	SO2592	0.61	-1.9
2,720,522	+	pyrD	SO2592	0.72	-0.3
2,720,533	+	pyrD	SO2592	0.73	-1.4
2,720,545	+	pyrD	SO2592	0.74	-1.5
2,720,547	-	pyrD	SO2592	0.74	-2.2