Strain Fitness in Shewanella oneidensis MR-1 around SO2309

Experiment: Cisplatin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2308 and crcB overlap by 8 nucleotidescrcB and serS are separated by 18 nucleotides SO2308: SO2308 - ATPase, AAA family (NCBI ptt file), at 2,420,521 to 2,421,858 SO2308 SO2309: crcB - crcB protein (NCBI ptt file), at 2,421,851 to 2,422,225 crcB SO2310: serS - seryl-tRNA synthetase (NCBI ptt file), at 2,422,244 to 2,423,530 serS Position (kb) 2421 2422 2423Strain fitness (log2 ratio) -3 -2 -1 0 1at 2421.046 kb on - strand, within SO2308at 2421.190 kb on - strand, within SO2308at 2421.549 kb on + strand, within SO2308at 2421.612 kb on - strand, within SO2308at 2421.689 kb on + strand, within SO2308at 2421.699 kb on + strand, within SO2308at 2421.826 kb on + strandat 2421.867 kb on - strandat 2421.874 kb on - strandat 2421.877 kb on + strandat 2421.995 kb on + strand, within crcB

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.004 mg/ml
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2,421,046 - SO2308 0.39 -2.9
2,421,190 - SO2308 0.50 -2.0
2,421,549 + SO2308 0.77 -0.9
2,421,612 - SO2308 0.82 -2.6
2,421,689 + SO2308 0.87 +1.1
2,421,699 + SO2308 0.88 -3.0
2,421,826 + +0.5
2,421,867 - -0.7
2,421,874 - -0.4
2,421,877 + -2.5
2,421,995 + crcB SO2309 0.38 +1.0

Or see this region's nucleotide sequence