Strain Fitness in Shewanella oneidensis MR-1 around SO2309
Experiment: Cisplatin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,421,046 | - | SO2308 | 0.39 | -2.9 | |
2,421,190 | - | SO2308 | 0.50 | -2.0 | |
2,421,549 | + | SO2308 | 0.77 | -0.9 | |
2,421,612 | - | SO2308 | 0.82 | -2.6 | |
2,421,689 | + | SO2308 | 0.87 | +1.1 | |
2,421,699 | + | SO2308 | 0.88 | -3.0 | |
2,421,826 | + | +0.5 | |||
2,421,867 | - | -0.7 | |||
2,421,874 | - | -0.4 | |||
2,421,877 | + | -2.5 | |||
2,421,995 | + | crcB | SO2309 | 0.38 | +1.0 |
Or see this region's nucleotide sequence