Strain Fitness in Shewanella oneidensis MR-1 around SO2254
Experiment: Cisplatin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,365,875 | - | -1.3 | |||
2,365,875 | - | -2.2 | |||
2,365,885 | - | -0.1 | |||
2,365,909 | - | -1.1 | |||
2,366,024 | + | -0.6 | |||
2,366,303 | - | -0.2 | |||
2,366,407 | + | -0.8 | |||
2,366,422 | + | +1.1 | |||
2,366,489 | + | SO2253 | 0.12 | +0.5 | |
2,366,494 | + | SO2253 | 0.14 | -0.3 | |
2,366,661 | + | SO2253 | 0.75 | -0.4 | |
2,366,762 | + | -1.3 | |||
2,367,220 | - | SO2254 | 0.37 | +1.1 | |
2,367,303 | + | SO2254 | 0.45 | -2.6 | |
2,367,311 | - | SO2254 | 0.46 | +1.6 | |
2,367,311 | - | SO2254 | 0.46 | +0.5 | |
2,367,330 | + | SO2254 | 0.48 | +1.0 | |
2,367,496 | + | SO2254 | 0.65 | +1.0 | |
2,367,734 | + | SO2254 | 0.89 | -0.9 | |
2,367,797 | + | +0.2 | |||
2,368,039 | - | -0.8 | |||
2,368,117 | - | -1.1 | |||
2,368,192 | + | +0.1 | |||
2,368,440 | - | mfd | SO2255 | 0.17 | -1.7 |
Or see this region's nucleotide sequence