Strain Fitness in Shewanella oneidensis MR-1 around SO2128

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
2,233,856	+		SO2127	0.79	+0.4
2,233,939	+		SO2127	0.84	-0.3
2,233,939	+		SO2127	0.84	+0.1
2,233,939	+		SO2127	0.84	+0.4
2,233,947	-		SO2127	0.85	-1.1
2,234,020	+		SO2127	0.89	+0.3
2,234,028	-		SO2127	0.90	+0.3
2,234,068	+				-2.4
2,234,068	+				-0.9
2,234,077	+				+0.7
2,234,077	+				-0.2
2,234,077	+				-0.6
2,234,077	+				-0.9
2,234,077	+				-0.3
2,234,077	+				-0.6
2,234,077	+				+0.4
2,234,078	-				+0.4
2,234,085	-				-2.6
2,234,085	-				-1.3
2,234,085	-				+0.1
2,234,085	-				-1.3
2,234,085	-				-1.9
2,234,086	-				+0.6
2,234,126	-				+0.5
2,234,147	+				+0.9
2,234,147	+				+0.6
2,234,185	+				+0.5
2,234,193	-				+0.5
2,234,199	+				-1.0
2,234,200	-				-0.4
2,234,224	-				+0.3
2,234,239	-				-1.3
2,234,254	+				-0.2
2,234,306	+				+1.6
2,234,308	+				-2.1
2,234,316	-				-0.1
2,234,374	+				+0.4
2,234,382	-				-1.0
2,234,383	+				+0.6
2,234,383	+				-0.6
2,234,401	+				-1.0
2,234,401	+				+1.1
2,234,409	-				-1.7
2,234,409	-				-1.3
2,234,409	-				-1.0
2,234,418	+				+0.9
2,234,472	-				-0.3
2,234,485	+				+0.1
2,234,511	-				+0.1
2,234,521	+				+0.0
2,234,529	-				-0.1
2,234,536	-				-1.6
2,234,572	+				-1.0
2,234,572	+				-1.2
2,234,572	+				-0.6
2,234,572	+				+0.8
2,234,572	+				-0.1
2,234,572	+				-0.3
2,234,572	+				+0.3
2,234,573	-				+0.1
2,234,580	-				+1.9
2,234,580	-				-1.5
2,234,599	-				-0.4
2,234,607	+				-1.5
2,234,607	+				-0.0
2,234,650	-				-0.5
2,234,665	+				+0.8
2,234,678	-				-0.3
2,234,773	+				+0.0
2,234,832	-		SO2128	0.18	-0.9
2,234,854	-		SO2128	0.28	+0.1
2,234,865	+		SO2128	0.33	-2.2
2,234,873	-		SO2128	0.36	-1.4
2,235,441	+				-0.1
2,235,441	+				-0.1
2,235,482	+				-0.4
2,235,535	+				-0.9
2,235,564	-				-0.3
2,235,581	+				+0.3
2,235,604	+				+0.1
2,235,670	-				+0.2
2,235,791	-				+0.1
2,235,837	+				-0.0
2,235,839	-				-1.9
2,235,840	-				+0.1
2,235,871	-		SO2129	0.12	-0.3
2,235,944	+		SO2129	0.19	-1.4
2,235,952	-		SO2129	0.20	-0.1
2,235,952	-		SO2129	0.20	-0.9