Strain Fitness in Shewanella oneidensis MR-1 around SO1980

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
2,083,652	-		SO1979	0.15	+0.2
2,083,736	+		SO1979	0.27	-0.2
2,083,793	+		SO1979	0.35	-0.2
2,083,793	+		SO1979	0.35	-0.0
2,083,796	-		SO1979	0.35	-1.5
2,083,803	+		SO1979	0.36	-2.1
2,083,811	-		SO1979	0.37	-0.5
2,083,811	-		SO1979	0.37	+0.1
2,083,811	-		SO1979	0.37	-0.2
2,083,857	+		SO1979	0.44	+0.0
2,083,865	-		SO1979	0.45	-1.6
2,083,865	-		SO1979	0.45	-0.5
2,084,054	-		SO1979	0.71	+0.1
2,084,061	-		SO1979	0.72	-2.0
2,084,097	+		SO1979	0.77	+0.2
2,084,285	+				+0.5
2,084,307	-				-1.4
2,084,319	-				-0.5
2,084,626	-				-1.1
2,084,859	+		SO1980	0.27	+0.1
2,084,883	-		SO1980	0.29	+0.6
2,084,908	-		SO1980	0.32	-0.2
2,084,919	+		SO1980	0.33	+1.3
2,084,943	+		SO1980	0.36	-1.4
2,085,165	+		SO1980	0.61	-2.5
2,085,173	-		SO1980	0.61	-1.3
2,085,191	+		SO1980	0.63	-0.8
2,085,199	-		SO1980	0.64	+0.1
2,085,248	+		SO1980	0.70	-0.8
2,085,313	-		SO1980	0.77	-0.4
2,085,420	+		SO1980	0.89	-0.6
2,085,428	-		SO1980	0.90	+0.3
2,085,428	-		SO1980	0.90	-1.6
2,085,428	-		SO1980	0.90	+0.3
2,085,430	+		SO1980	0.90	+1.1
2,085,456	+				+0.4
2,085,456	-				-0.4
2,085,498	+				-1.1
2,085,506	-				+0.5
2,085,506	-				-0.5
2,085,629	+				+0.3
2,085,645	+				-1.0
2,085,743	-		SO1981	0.14	+0.0
2,085,883	-		SO1981	0.24	+0.1
2,085,904	+		SO1981	0.25	-0.6
2,085,972	+		SO1981	0.30	-2.0
2,085,973	+		SO1981	0.30	-0.2
2,085,974	+		SO1981	0.30	+1.2
2,085,980	-		SO1981	0.30	+0.6
2,085,982	+		SO1981	0.31	-1.4
2,085,992	-		SO1981	0.31	-0.3
2,086,066	+		SO1981	0.36	-0.2
2,086,141	+		SO1981	0.41	-0.2
2,086,205	-		SO1981	0.46	-1.8
2,086,242	+		SO1981	0.48	-0.7
2,086,244	+		SO1981	0.48	-1.1
2,086,262	-		SO1981	0.50	-1.5
2,086,384	+		SO1981	0.58	-1.6
2,086,437	+		SO1981	0.61	+0.2
2,086,437	+		SO1981	0.61	+0.4
2,086,502	+		SO1981	0.66	+0.4
2,086,509	+		SO1981	0.66	-1.1