Strain Fitness in Shewanella oneidensis MR-1 around SO1879

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
1,973,647	-	bcp	SO1877	0.44	-0.4
1,973,698	-	bcp	SO1877	0.54	+0.0
1,973,726	-	bcp	SO1877	0.60	+0.1
1,973,760	+	bcp	SO1877	0.68	-0.0
1,973,760	+	bcp	SO1877	0.68	-1.6
1,973,760	+	bcp	SO1877	0.68	+0.4
1,973,760	+	bcp	SO1877	0.68	-0.1
1,973,760	+	bcp	SO1877	0.68	-0.6
1,973,760	+	bcp	SO1877	0.68	-3.2
1,973,760	+	bcp	SO1877	0.68	-1.2
1,973,760	+	bcp	SO1877	0.68	-0.2
1,973,760	+	bcp	SO1877	0.68	-1.4
1,973,765	+	bcp	SO1877	0.69	+0.6
1,973,768	-	bcp	SO1877	0.69	-2.3
1,973,768	-	bcp	SO1877	0.69	-1.3
1,973,768	-	bcp	SO1877	0.69	-1.7
1,973,768	-	bcp	SO1877	0.69	-2.9
1,973,768	-	bcp	SO1877	0.69	+0.1
1,973,768	-	bcp	SO1877	0.69	-0.1
1,973,768	-	bcp	SO1877	0.69	-1.2
1,973,768	-	bcp	SO1877	0.69	+0.4
1,973,768	-	bcp	SO1877	0.69	+0.1
1,973,805	+	bcp	SO1877	0.77	-0.9
1,973,814	-	bcp	SO1877	0.79	-1.1
1,973,897	+				-0.4
1,973,970	-				+0.9
1,974,116	-		SO1878	0.36	-0.8
1,974,130	+		SO1878	0.39	-0.8
1,974,140	+		SO1878	0.41	-0.2
1,974,148	-		SO1878	0.42	-2.5
1,974,313	+		SO1878	0.72	-0.1
1,974,437	-				+1.2
1,974,445	+				-1.5
1,974,553	-				+0.4
1,974,579	-				+0.9
1,975,817	+	nlpB	SO1880	0.26	-1.3
1,975,940	-	nlpB	SO1880	0.38	-2.3
1,975,974	+	nlpB	SO1880	0.41	+0.6
1,975,982	-	nlpB	SO1880	0.41	-3.6
1,976,153	+	nlpB	SO1880	0.57	-3.1
1,976,161	-	nlpB	SO1880	0.58	-0.7
1,976,161	-	nlpB	SO1880	0.58	-1.7
1,976,161	-	nlpB	SO1880	0.58	-1.7
1,976,187	+	nlpB	SO1880	0.60	-0.6
1,976,242	+	nlpB	SO1880	0.65	-0.3
1,976,242	+	nlpB	SO1880	0.65	-0.2
1,976,370	+	nlpB	SO1880	0.77	-0.8
1,976,370	+	nlpB	SO1880	0.77	-0.7
1,976,378	-	nlpB	SO1880	0.78	-2.1