Strain Fitness in Shewanella oneidensis MR-1 around SO1861

Experiment: Cisplatin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.004 mg/ml
1,951,580	+				-2.8
1,951,596	+				-2.2
1,951,719	+				-0.2
1,951,761	-				-2.4
1,951,780	-				-4.3
1,951,780	-				-3.8
1,951,780	-				-1.8
1,951,780	-				-2.1
1,951,780	-				-2.5
1,951,782	+				-0.9
1,951,787	+				-2.2
1,951,787	+				-2.6
1,951,787	+				-1.5
1,951,787	+				-0.2
1,951,787	+				+0.0
1,951,787	+				+0.4
1,951,787	+				-2.8
1,951,795	-				-1.7
1,951,830	+				-3.2
1,951,840	+				-0.6
1,951,840	+				-1.5
1,951,840	+				-0.8
1,951,845	+				-1.8
1,951,845	+				-3.0
1,951,853	-				-3.7
1,951,853	-				-2.5
1,951,853	-				-4.2
1,951,853	-				-4.0
1,951,929	+		SO1860	0.19	-4.9
1,951,937	-		SO1860	0.20	-4.1
1,951,942	-		SO1860	0.21	-3.9
1,952,057	+		SO1860	0.39	-1.9
1,952,135	-		SO1860	0.51	-1.4
1,952,168	-		SO1860	0.56	-3.4
1,952,299	+		SO1860	0.77	-1.8
1,952,300	-		SO1860	0.77	-1.3
1,952,320	+		SO1860	0.80	-2.7
1,952,320	+		SO1860	0.80	+0.0
1,952,328	-		SO1860	0.81	-1.6
1,952,347	+		SO1860	0.84	-3.1
1,952,385	+				-1.7
1,952,391	+				-1.4
1,952,391	+				-2.3
1,952,399	-				-3.0
1,952,489	+				+0.1
1,952,565	+				-1.5
1,952,630	+				-3.3
1,952,767	+	uvrC	SO1861	0.12	-1.1
1,952,816	+	uvrC	SO1861	0.14	-1.7
1,952,824	-	uvrC	SO1861	0.15	-3.4
1,952,898	-	uvrC	SO1861	0.19	-3.6
1,952,899	+	uvrC	SO1861	0.19	-2.3
1,952,947	-	uvrC	SO1861	0.21	-2.0
1,952,953	-	uvrC	SO1861	0.22	-2.7
1,952,977	-	uvrC	SO1861	0.23	-1.9
1,953,008	+	uvrC	SO1861	0.25	-2.0
1,953,323	+	uvrC	SO1861	0.42	-3.1
1,953,326	-	uvrC	SO1861	0.42	-2.3
1,953,331	-	uvrC	SO1861	0.42	-3.3
1,953,354	-	uvrC	SO1861	0.44	-1.1
1,953,435	+	uvrC	SO1861	0.48	-2.8
1,953,435	+	uvrC	SO1861	0.48	-4.9
1,953,450	-	uvrC	SO1861	0.49	+0.4
1,953,543	-	uvrC	SO1861	0.54	-2.4
1,953,745	+	uvrC	SO1861	0.65	-2.3
1,953,778	+	uvrC	SO1861	0.67	-2.3
1,953,795	+	uvrC	SO1861	0.68	+0.2
1,953,864	-	uvrC	SO1861	0.71	-2.3
1,954,055	+	uvrC	SO1861	0.82	-4.3
1,954,063	-	uvrC	SO1861	0.82	-2.4
1,954,129	+	uvrC	SO1861	0.86	-0.8